phylter
CRANphylterMaRDI QIDQ73603FDOQ73603
Detect and Remove Outliers in Phylogenomics Datasets
Stéphane Dray, Théo Tricou, Aurélie Siberchicot, Damien M. de Vienne
Last update: 24 August 2023
Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0
Software version identifier: 0.9.7, 0.9.6, 0.9.11
Analyzis and filtering of phylogenomics datasets. It takes an input either a collection of gene trees (then transformed to matrices) or directly a collection of gene matrices and performs an iterative process to identifywhat species in what genes are outliers, and whose elimination significantly improves the concordance between the input matrices. The methods builds upon the Distatis approach (Abdi et al. (2005) <doi:10.1101/2021.09.08.459421>), a generalization of classical multidimensional scaling to multiple distance matrices.
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