glinvci

CRANglinvciMaRDI QIDQ86834FDOQ86834

Phylogenetic Comparative Methods with Uncertainty Estimates

Hao Chi Kiang

Last update: 10 December 2023

Copyright license: GNU General Public License, version 3.0

Software version identifier: 1.1.21, 1.1.4, 1.1.16, 1.1.17, 1.1.18, 1.1.20, 1.2.1, 1.2.2

Description

A framework for analytically computing the asymptotic confidence intervals and maximum-likelihood estimates of a class of continuous-time Gaussian branching processes defined by Mitov V, Bartoszek K, Asimomitis G, Stadler T (2019) <doi:10.1016/j.tpb.2019.11.005>. The class of model includes the widely used Ornstein-Uhlenbeck and Brownian motion branching processes. The framework is designed to be flexible enough so that the users can easily specify their own sub-models, or re-parameterizations, and obtain the maximum-likelihood estimates and confidence intervals of their own custom models.

Cites work

• Fast likelihood calculation for multivariate Gaussian phylogenetic models with shifts

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