Fast likelihood calculation for multivariate Gaussian phylogenetic models with shifts

DOI10.1016/J.TPB.2019.11.005OpenAlexW3106004358WikidataQ91724004 ScholiaQ91724004MaRDI QIDQ86833FDOQ86833

Authors Venelin Mitov, Krzysztof Bartoszek, Georgios Asimomitis, Tanja Stadler, Venelin Mitov, Georgios Asimomitis, Tanja Stadler 

Publication date February 2020

Published in Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/1809.09014

zbMATH Keywords

driftjumpspruningpunctuated equilibriumselectionLévy process

Mathematics Subject Classification ID

Biology and other natural sciences (92-XX)

Recommendations

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Cites work

• scientific article; zbMATH DE number 6159604 (Why is no real title available?)
• scientific article; zbMATH DE number 3323598 (Why is no real title available?)
• A phylogenetic comparative method for studying multivariate adaptation
• Assessing phenotypic correlation through the multivariate phylogenetic latent liability model
• On incomplete sampling under birth-death models and connections to the sampling-based coalescent
• Phenotypic evolution studied by layered stochastic differential equations
• Powers of tensors and fast matrix multiplication
• Quantifying the effects of anagenetic and cladogenetic evolution

Cited in

(9)

• On the covariance of phylogenetic quantitative trait evolution models and their matrix condition
• Detection of Adaptive Shifts on Phylogenies by using Shifted Stochastic Processes on a Tree
• A central limit theorem for punctuated equilibrium
• Ancestral sequence reconstruction for co-evolutionary models
• Efficient Bayesian inference of general Gaussian models on large phylogenetic trees
• Global multivariate model learning from hierarchically correlated data
• glinvci
• Large-scale inference of correlation among mixed-type biological traits with phylogenetic multivariate probit models
• Inferring Phenotypic Trait Evolution on Large Trees With Many Incomplete Measurements

Describes a project that uses

Uses Software

• R
• phytools
• GEIGER
• mvMORPH
• PCMBase
• diversitree
• Rphylopars
• ratematrix
• SPLITT

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