Entity usage

Showing below up to 50 results in range #1 to #50.

1. i6mA-Pred: identifying DNA N6-methyladenine sites in the rice genome: Label: en
2. scrm: efficiently simulating long sequences using the approximated coalescent with recombination: Label: en
3. BBmix: a Bayesian beta-binomial mixture model for accurate genotyping from RNA-sequencing: Label: en
4. tcpl: the ToxCast pipeline for high-throughput screening data: Label: en
5. Rgb: a scriptable genome browser for R: Label: en
6. RxnSim: a tool to compare biochemical reactions: Label: en
7. Network-constrained regularization and variable selection for analysis of genomic data: Label: en
8. Penalized regression with multiple sources of prior effects: Label: en
9. CPS analysis: self-contained validation of biomedical data clustering: Label: en
10. adephylo: new tools for investigating the phylogenetic signal in biological traits: Label: en
11. A two-part mixed-effects model for analyzing longitudinal microbiome compositional data: Label: en
12. cloneRate: fast estimation of single-cell clonal dynamics using coalescent theory: Label: en
13. Automated calibration of consensus weighted distance-based clustering approaches using sharp: Label: en
14. The revival of the Gini importance?: Label: en
15. Network-based analysis of omics data: the LEAN method: Label: en
16. Epistasis detection on quantitative phenotypes by exhaustive enumeration using GPUs: Label: en
17. Tropical principal component analysis on the space of phylogenetic trees: Label: en
18. A mixture model-based approach to the clustering of microarray expression data: Label: en
19. Independent surrogate variable analysis to deconvolve confounding factors in large-scale microarray profiling studies: Label: en
20. Multiple hot-deck imputation for network inference from RNA sequencing data: Label: en
21. myTAI: evolutionary transcriptomics with R: Label: en
22. Enhancing scatterplots with smoothed densities: Label: en
23. Interaction screening by Kendall’s partial correlation for ultrahigh-dimensional data with survival trait: Label: en
24. Non-parametric quantification of protein lysate arrays: Label: en
25. Genome-wide genetic heterogeneity discovery with categorical covariates: Label: en
26. A variance-stabilizing transformation for gene-expression microarray data: Label: en
27. treePL: divergence time estimation using penalized likelihood for large phylogenies: Label: en
28. MRBAYES: Bayesian inference of phylogenetic trees: Label: en
29. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data: Label: en
30. PANACEA: network-based methods for pharmacotherapy prioritization in personalized oncology: Label: en
31. linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type: Label: en
32. CircaCompare: a method to estimate and statistically support differences in mesor, amplitude and phase, between circadian rhythms: Label: en
33. Differential expression in SAGE: accounting for normal between-library variation: Label: en
34. DINGO: differential network analysis in genomics: Label: en
35. A high-performance computing toolset for relatedness and principal component analysis of SNP data: Label: en
36. Overcoming biases in causal inference of molecular interactions: Label: en
37. CellCODE: a robust latent variable approach to differential expression analysis for heterogeneous cell populations: Label: en
38. Sparse group factor analysis for biclustering of multiple data sources: Label: en
39. IntegratedMRF: random forest-based framework for integrating prediction from different data types: Label: en
40. simPATHy: a new method for simulating data from perturbed biological PATHways: Label: en
41. Quick calculation for sample size while controlling false discovery rate with application to microarray analysis: Label: en
42. Identifying small-effect genetic associations overlooked by the conventional fixed-effect model in a large-scale meta-analysis of coronary artery disease: Label: en
43. Group and sparse group partial least square approaches applied in genomics context: Label: en
44. markophylo: Markov chain analysis on phylogenetic trees: Label: en
45. Matrix eQTL: ultra fast eQTL analysis via large matrix operations: Label: en
46. Gene ranking and biomarker discovery under correlation: Label: en
47. cit: hypothesis testing software for mediation analysis in genomic applications: Label: en
48. Bayesian structural equation modeling in multiple omics data with application to circadian genes: Label: en
49. repfdr: a tool for replicability analysis for genome-wide association studies: Label: en
50. NAM: association studies in multiple populations: Label: en