Stochastic Modeling of Cytoplasmic Reactions in Complex Biological Systems

DOI10.1007/11751540_60MaRDI QIDQ5505359zbMATH OpenOpenAlexFDO

Authors P. Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das, Simon Daefler

Publication date 27 January 2009

Published in Computational Science and Its Applications - ICCSA 2006 (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/11751540_60

Mathematics Subject Classification ID

Probabilistic models, generic numerical methods in probability and statistics (65C20) Cell biology (92C37) Biochemistry, molecular biology (92C40)

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(12)

• Parametric modeling of protein-DNA binding kinetics: a discrete event based simulation approach
• Multiscale models and stochastic simulation methods for computing rare but key binding events in cell biology
• Reaction rate theory-based mathematical approximation for the amount of time it takes for cellular respiration to occur
• Modeling of sensing potency of cytoskeletal systems decorated with metabolic enzymes
• Modelling biochemical reaction systems by stochastic differential equations with reflection
• A Stochastic Model of the Production of Multiple Proteins in Cells
• A Computationally Fast and Parametric Model to Estimate Protein-Ligand Docking Time for Stochastic Event Based Simulation
• Reversible Doi and Smoluchowski kinetics for high-order reactions
• Stochastic Processes, Multiscale Modeling, and Numerical Methods for Computational Cellular Biology
• Stochastic Processes in Cell Biology
• Deterministic and stochastic P systems for modelling cellular processes
• Two coarse-graining studies of stochastic models in molecular biology

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