Structure preserving integration and model order reduction of skew-gradient reaction-diffusion systems
From MaRDI portal
Abstract: Activator-inhibitor FitzHugh-Nagumo (FHN) equation is an example for reaction-diffusion equations with skew-gradient structure. We discretize the FHN equation using symmetric interior penalty discontinuous Galerkin (SIPG) method in space and average vector field (AVF) method in time. The AVF method is a geometric integrator, i.e. it preserves the energy of the Hamiltonian systems and energy dissipation of the gradient systems. In this work, we show that the fully discrete energy of the FHN equation satisfies the mini-maximizer property of the continuous energy for the skew-gradient systems. We present numerical results with traveling fronts and pulses for one dimensional, two coupled FHN equations and three coupled FHN equations with one activator and two inhibitors in skew-gradient form. Turing patterns are computed for fully discretized two dimensional FHN equation in the form of spots and labyrinths. Because the computation of the Turing patterns is time consuming for different parameters, we applied model order reduction with the proper orthogonal decomposition (POD). The nonlinear term in the reduced equations is computed using the discrete empirical interpolation (DEIM) with SIPG discretization. Due to the local nature of the discontinuous Galerkin (DG) method, the nonlinear terms can be computed more efficiently than for the continuous finite elements. The reduced solutions are very close to the fully discretized ones. The efficiency and accuracy of the POD and POD-DEIM reduced solutions are shown for the labyrinth-like patterns.
Recommendations
- Model order reduction for pattern formation in Fitzhugh-Nagumo equations
- Structure preserving reduced order modeling for gradient systems
- Model reduction for Fisher's equation with an error bound
- Reduced order optimal control of the convective FitzHugh-Nagumo equations
- Nonlinear model reduction via discrete empirical interpolation
Cites work
- An `empirical interpolation' method: Application to efficient reduced-basis discretization of partial differential equations
- An Interior Penalty Finite Element Method with Discontinuous Elements
- Application of the Discrete Empirical Interpolation Method to Reduced Order Modeling of Nonlinear and Parametric Systems
- Discontinuous Galerkin Methods for Solving Elliptic and Parabolic Equations
- Energy-diminishing integration of gradient systems
- Galerkin proper orthogonal decomposition methods for parabolic problems
- Mini-maximizers for reaction-diffusion systems with skew-gradient structure
- Nonlinear model reduction via discrete empirical interpolation
- Planar radial spots in a three-component FitzHugh-Nagumo system
- Preserving energy resp. dissipation in numerical PDEs using the ``Average Vector Field method
- Pulse dynamics in a three-component system: Stability and bifurcations
- Stability analysis for standing pulse solutions to FitzHugh-Nagumo equations
- Standing pulse solutions in reaction-diffusion systems with skew-gradient structure
- The chemical basis of morphogenesis
Cited in
(8)- Energy preserving model order reduction of the nonlinear Schrödinger equation
- Reduced order optimal control of the convective FitzHugh-Nagumo equations
- Structure preserving reduced order modeling for gradient systems
- Designing an efficient blood supply chain network in crisis: neural learning, optimization and case study
- Model order reduction for pattern formation in Fitzhugh-Nagumo equations
- Energy stable model order reduction for the Allen-Cahn equation
- An optimal control problem of nonlocal Pyragas feedback controllers for convective FitzHugh-Nagumo equations with time-delay
- General numerical framework to derive structure preserving reduced order models for thermodynamically consistent reversible-irreversible PDEs
This page was built for publication: Structure preserving integration and model order reduction of skew-gradient reaction-diffusion systems
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q1699929)
