Testing the order of Markov dependence in DNA sequences

DOI10.1007/S11009-008-9107-1MaRDI QIDQ631473zbMATH OpenOpenAlexFDO

Authors M. Luisa Menendez, Leandro Pardo, María del Carmen Pardo, K. Zografos

Publication date 14 March 2011

Published in Methodology and Computing in Applied Probability (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s11009-008-9107-1

zbMATH Keywords

likelihood ratio testDNA sequenceMarkov dependencephi-divergence test statistics

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Applications of statistics to biology and medical sciences; meta analysis (62P10) Markov processes: hypothesis testing (62M02) Biochemistry, molecular biology (92C40) Probabilistic models, generic numerical methods in probability and statistics (65C20)

Recommendations

• Fitting Markov property to genetic sequences
• Fitting DNA sequences through log-linear modelling with linear constraints
• Application of information-theoretic tests for the analysis of DNA sequences based on Markov chain models
• Publication:4731049
• Fitting Markov Chain Models to Discrete State Series such as DNA Sequences

Cites work

• scientific article; zbMATH DE number 3174032 (Why is no real title available?)
• scientific article; zbMATH DE number 952738 (Why is no real title available?)
• scientific article; zbMATH DE number 2221907 (Why is no real title available?)
• A TEST FOR MARKOFF CHAINS
• Csiszar's \(\varphi\)-divergence for testing the order in a Markov chain.
• Fitting Markov Chain Models to Discrete State Series such as DNA Sequences
• Goodness-of-fit statistics for discrete multivariate data
• On tests of independence based on minimum \(\varphi \)-divergence estimator with constraints: An application to modeling DNA
• Statistical Methods in Markov Chains
• The \(\varphi\)-divergence statistic in bivariate multinomial populations including stratification

Cited in

(15)

• Fitting Markov property to genetic sequences
• Application of information-theoretic tests for the analysis of DNA sequences based on Markov chain models
• Constrained Markov order surrogates
• Statistics and probability theory in renewable energy: teaching and research
• Fitting DNA sequences through log-linear modelling with linear constraints
• A data driven runs test to identify first-order positive Markovian dependence
• scientific article; zbMATH DE number 4116364 (Why is no real title available?)
• A Test of the Markovian Model of DNA Evolution
• LOGIT ANALYSIS OF GENETIC DATA
• Tsallis conditional mutual information in investigating long range correlation in symbol sequences
• A New Order Estimator for Fixed and Variable Length Markov Models with Applications to DNA Sequence Similarity
• Auto-selection order of Markov chain for background sequences with chi-square test
• Scalable test of statistical significance for protein-DNA binding changes with insertion and deletion of bases in the genome
• Acquisition Times of Contiguous and Distributed Marker Sequences: A Cross-Bifix Analysis
• Test on the Structure of Biological Sequences via Chaos Game Representation

This page was built for publication: Testing the order of Markov dependence in DNA sequences

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q631473)