tidyestimate

CRANtidyestimateMaRDI QIDQ121936FDOQ121936

A Tidy Implementation of 'ESTIMATE'

Roel Verhaak, Kai Aragaki, Hoon Kim, Rahulsimham Vegesna, Kosuke Yoshihara

Last update: 21 August 2023

Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0

Software version identifier: 1.1.0, 1.0.4, 1.1.1

Description

The 'ESTIMATE' package infers tumor purity from expression data as a function of immune and stromal infiltrate, but requires writing of intermediate files, is un-pipeable, and performs poorly when presented with modern datasets with current gene symbols. 'tidyestimate' a fast, tidy, modern reimagination of 'ESTIMATE' (2013) <doi:10.1038/ncomms3612>.

Cites work

• Inferring tumour purity and stromal and immune cell admixture from expression data

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