tidyestimate

MaRDI QIDQ121936CRANFDO

Authors Kai Aragaki, Kosuke Yoshihara, Rahulsimham Vegesna, Hoon Kim, Roel Verhaak

Last update 21 August 2023

Copyright license GNU General Public License, version 2.0, GNU General Public License, version 3.0

Software version identifier 1.1.0, 1.0.4, 1.1.1

Description

The 'ESTIMATE' package infers tumor purity from expression data as a function of immune and stromal infiltrate, but requires writing of intermediate files, is un-pipeable, and performs poorly when presented with modern datasets with current gene symbols. 'tidyestimate' a fast, tidy, modern reimagination of 'ESTIMATE' (2013) <doi:10.1038/ncomms3612>.

Cites work

• Inferring tumour purity and stromal and immune cell admixture from expression data

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