Topological object data analysis methods with an application to medical imaging

DOI10.1007/978-3-030-47756-1_31MaRDI QIDQ3300659zbMATH OpenOpenAlexFDO

Authors Chen Shen, Vic Patrangenaru

Publication date 29 July 2020

Published in Functional and High-Dimensional Statistics and Related Fields (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-030-47756-1_31

zbMATH Keywords

medical imagingtopological data analysis

Mathematics Subject Classification ID

Image analysis in multivariate analysis (62H35) Applications of statistics to biology and medical sciences; meta analysis (62P10) Topological data analysis (62R40) Learning and adaptive systems in artificial intelligence (68T05) Computer graphics; computational geometry (digital and algorithmic aspects) (68U05) Biomedical imaging and signal processing (92C55)

Recommendations

• An introduction to topological object data analysis
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Cites work

• A persistence landscapes toolbox for topological statistics
• A statistical approach to persistent homology
• Challenges in topological object data analysis
• Computational topology. An introduction
• Nonparametric estimation of means on Hilbert manifolds and extrinsic analysis of mean shapes of contours
• Nonparametric statistics on manifolds and their applications to object data analysis
• Persistent homology -- a survey
• Statistical inference using the Morse-Smale complex
• Statistical topological data analysis using persistence landscapes
• Statistical topology via Morse theory, persistence and nonparametric estimation
• Topological persistence and simplification

Cited in

(8)

• A topological analysis of targeted In-111 uptake in SPECT images of murine tumors
• Challenges in topological object data analysis
• scientific article; zbMATH DE number 1746658 (Why is no real title available?)
• Predicting clinical outcomes in glioblastoma: an application of topological and functional data analysis
• An introduction to topological object data analysis
• Topology Preserving Linear Filtering Applied to Medical Imaging
• A topological approach to quantitation of rheumatoid arthritis
• Cancer Fingerprints by Topological Data Analysis

Describes a project that uses

Uses Software

• Persistence Landscape
• Ripser
• GitHub

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