| Publication | Date of Publication | Type |
|---|
Undesignable motifs in structural RNAs and combinatorial consequences
Journal of Mathematical Biology | 2026-03-31 | Paper |
Bipartite independent set reconfiguration: general and RNA-inspired parameterized algorithms
Algorithmica | 2026-03-20 | Paper |
| RNA inverse folding can be solved in linear time for structures without isolated stacks or base pairs | 2026-02-13 | Paper |
| RNA triplet repeats: improved algorithms for structure prediction and interactions | 2026-02-13 | Paper |
| Old dog, new tricks: exact seeding strategy improves RNA design performances | 2025-12-04 | Paper |
| Color coding for the fragment-based docking, design and equilibrium statistics of protein-binding ssRNAs | 2025-02-24 | Paper |
| Automatic exploration of the natural variability of RNA non-canonical geometric patterns with a parameterized sampling technique | 2024-12-09 | Paper |
| Automated design of dynamic programming schemes for RNA folding with pseudoknots | 2024-08-13 | Paper |
| scientific article; zbMATH DE number 7803589 (Why is no real title available?) | 2024-02-12 | Paper |
| scientific article; zbMATH DE number 7716293 (Why is no real title available?) | 2023-07-24 | Paper |
| Sequence graphs realizations and ambiguity in language models | 2023-03-30 | Paper |
Stochastic sampling of structural contexts improves the scalability and accuracy of RNA 3D module identification
Lecture Notes in Computer Science | 2022-10-14 | Paper |
Counting and sampling gene family evolutionary histories in the duplication-loss and duplication-loss-transfer models
Journal of Mathematical Biology | 2020-03-05 | Paper |
On the diversity of pattern distributions in rational language.
2012 Proceedings of the Ninth Workshop on Analytic Algorithmics and Combinatorics (ANALCO) | 2019-09-17 | Paper |
Counting, Generating, Analyzing and Sampling Tree Alignments
International Journal of Foundations of Computer Science | 2018-09-20 | Paper |
Taming reluctant random walks in the positive quadrant
(available as arXiv preprint) | 2018-01-04 | Paper |
Combinatorial RNA design: designability and structure-approximating algorithm in Watson-Crick and Nussinov-Jacobson energy models
Algorithmica | 2017-11-09 | Paper |
| Multi-dimensional Boltzmann sampling of languages | 2017-02-10 | Paper |
Counting, Generating and Sampling Tree Alignments
Algorithms for Computational Biology | 2016-10-06 | Paper |
Combinatorial RNA design: designability and structure-approximating algorithm
Combinatorial Pattern Matching | 2015-08-20 | Paper |
The weighted words collector
(available as arXiv preprint) | 2014-09-29 | Paper |
| The weighted words collector | 2014-09-29 | Paper |
Non-redundant random generation algorithms for weighted context-free grammars
Theoretical Computer Science | 2014-01-10 | Paper |
Expected distance between terminal nucleotides of RNA secondary structures
Journal of Mathematical Biology | 2012-10-22 | Paper |
Impact of the energy model on the complexity of RNA folding with pseudoknots
Combinatorial Pattern Matching | 2012-08-14 | Paper |
Culminating paths
(available as arXiv preprint) | 2010-07-27 | Paper |
| Culminating paths | 2010-07-27 | Paper |
Efficient sampling of RNA secondary structures from the Boltzmann ensemble of low-energy
Journal of Mathematical Biology | 2008-08-18 | Paper |
