spOccupancy (Q56303): Difference between revisions

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@@ Property / last update @@
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-The recent past and promising future for data integration methods to estimate species’ distributions
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-ESTIMATING SITE OCCUPANCY RATES WHEN DETECTION PROBABILITIES ARE LESS THAN ONE
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-Estimating Size and Composition of Biological Communities by Modeling the Occurrence of Species
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@@ Property / cites work @@
-spNNGP R package for Nearest Neighbor Gaussian Process models
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+Fits single-species, multi-species, and integrated non-spatial and spatial occupancy models using Markov Chain Monte Carlo (MCMC). Models are fit using Polya-Gamma data augmentation detailed in Polson, Scott, and Windle (2013) <doi:10.1080/01621459.2013.829001>. Spatial models are fit using either Gaussian processes or Nearest Neighbor Gaussian Processes (NNGP) for large spatial datasets. Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2020) <arXiv:2001.09111>. Provides functionality for data integration of multiple single-species occupancy data sets using a joint likelihood framework. Details on data integration are given in Miller, Pacifici, Sanderlin, and Reich (2019) <doi:10.1111/2041-210X.13110>. Details on single-species and multi-species models are found in MacKenzie, Nichols, Lachman, Droege, Royle, and Langtimm (2002) <doi:10.1890/0012-9658(2002)083[2248:ESORWD]2.0.CO;2> and Dorazio and Royle <doi:10.1198/016214505000000015>, respectively.
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+Jeffrey Doser
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+Andrew O. Finley
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+GNU General Public License
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+Bayesian Inference for Logistic Models Using Pólya–Gamma Latent Variables
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+Hierarchical Nearest-Neighbor Gaussian Process Models for Large Geostatistical Datasets
+Normal rank
@@ Property / cites work @@
+The recent past and promising future for data integration methods to estimate species’ distributions
+Normal rank
@@ Property / cites work @@
+ESTIMATING SITE OCCUPANCY RATES WHEN DETECTION PROBABILITIES ARE LESS THAN ONE
+Normal rank
@@ Property / cites work @@
+Estimating Size and Composition of Biological Communities by Modeling the Occurrence of Species
+Normal rank
@@ Property / cites work @@
+spNNGP R package for Nearest Neighbor Gaussian Process models
+Normal rank
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+https://github.com/cran/spOccupancy
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@@ links / mardi / name / links / mardi / name @@
+Software:56303

Latest revision as of 07:36, 22 March 2024

Single-Species, Multi-Species, and Integrated Spatial Occupancy Models

Language	Label	Description	Also known as
English	spOccupancy	Single-Species, Multi-Species, and Integrated Spatial Occupancy Models

Statements

0 references

0 references

software version identifier

0.6.1

publication date

11 March 2023

0 references

0.1.2

publication date

11 November 2021

0 references

0.1.3

publication date

25 November 2021

0 references

0.2.0

publication date

19 December 2021

0 references

0.2.1

publication date

7 January 2022

0 references

0.3.0

publication date

29 March 2022

0 references

0.3.1

publication date

13 April 2022

0 references

0.3.2

publication date

22 May 2022

0 references

0.4.0

publication date

13 July 2022

0 references

0.5.0

publication date

16 November 2022

0 references

0.5.1

publication date

8 December 2022

0 references

0.5.2

publication date

21 December 2022

0 references

0.6.0

publication date

3 March 2023

0 references

0.7.0

publication date

16 August 2023

0 references

0.7.1

publication date

1 September 2023

0 references

0.7.2

publication date

1 November 2023

0 references

0 references

0 references

0 references

1 November 2023

0 references

description

Fits single-species, multi-species, and integrated non-spatial and spatial occupancy models using Markov Chain Monte Carlo (MCMC). Models are fit using Polya-Gamma data augmentation detailed in Polson, Scott, and Windle (2013) <doi:10.1080/01621459.2013.829001>. Spatial models are fit using either Gaussian processes or Nearest Neighbor Gaussian Processes (NNGP) for large spatial datasets. Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2020) <arXiv:2001.09111>. Provides functionality for data integration of multiple single-species occupancy data sets using a joint likelihood framework. Details on data integration are given in Miller, Pacifici, Sanderlin, and Reich (2019) <doi:10.1111/2041-210X.13110>. Details on single-species and multi-species models are found in MacKenzie, Nichols, Lachman, Droege, Royle, and Langtimm (2002) <doi:10.1890/0012-9658(2002)083[2248:ESORWD]2.0.CO;2> and Dorazio and Royle <doi:10.1198/016214505000000015>, respectively.

0 references

0 references

0 references

GNU General Public License

edition/version

≥ 3 (English)

0 references

imports