spOccupancy (Q56303): Difference between revisions
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Swh import (talk | contribs) SWHID from Software Heritage |
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Property / source code repository: https://github.com/cran/spOccupancy / rank | |||||||||||||||
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Property / Software Heritage ID: swh:1:snp:5ba43ce9976abbe8f5ed3db066471b5cbb3956dd / rank | |||||||||||||||
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Property / Software Heritage ID: swh:1:snp:5ba43ce9976abbe8f5ed3db066471b5cbb3956dd / qualifier | |||||||||||||||
Property / Software Heritage ID: swh:1:snp:5ba43ce9976abbe8f5ed3db066471b5cbb3956dd / qualifier | |||||||||||||||
point in time: 9 November 2023
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Latest revision as of 07:36, 22 March 2024
Single-Species, Multi-Species, and Integrated Spatial Occupancy Models
Language | Label | Description | Also known as |
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English | spOccupancy |
Single-Species, Multi-Species, and Integrated Spatial Occupancy Models |
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1 November 2023
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Fits single-species, multi-species, and integrated non-spatial and spatial occupancy models using Markov Chain Monte Carlo (MCMC). Models are fit using Polya-Gamma data augmentation detailed in Polson, Scott, and Windle (2013) <doi:10.1080/01621459.2013.829001>. Spatial models are fit using either Gaussian processes or Nearest Neighbor Gaussian Processes (NNGP) for large spatial datasets. Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2020) <arXiv:2001.09111>. Provides functionality for data integration of multiple single-species occupancy data sets using a joint likelihood framework. Details on data integration are given in Miller, Pacifici, Sanderlin, and Reich (2019) <doi:10.1111/2041-210X.13110>. Details on single-species and multi-species models are found in MacKenzie, Nichols, Lachman, Droege, Royle, and Langtimm (2002) <doi:10.1890/0012-9658(2002)083[2248:ESORWD]2.0.CO;2> and Dorazio and Royle <doi:10.1198/016214505000000015>, respectively.
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