Asymptotic analysis of a TMDD model: when a reaction contributes to the destruction of its product (Q667708): Difference between revisions

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Property / author: Dimitrios A. Goussis / rank
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Property / cites work
 
Property / cites work: H<sub>2</sub>/air autoignition: The nature and interaction of the developing explosive modes / rank
 
Normal rank
Property / cites work
 
Property / cites work: Geometric singular perturbation theory for ordinary differential equations / rank
 
Normal rank
Property / cites work
 
Property / cites work: Quasi steady state and partial equilibrium approximations: their relation and their validity / rank
 
Normal rank
Property / cites work
 
Property / cites work: The role of slow system dynamics in predicting the degeneracy of slow invariant manifolds: the case of vdP relaxation-oscillations / rank
 
Normal rank
Property / cites work
 
Property / cites work: Model Reduction for Combustion Chemistry / rank
 
Normal rank
Property / cites work
 
Property / cites work: Model Reduction and Physical Understanding of Slowly Oscillating Processes: The Circadian Cycle / rank
 
Normal rank
Property / cites work
 
Property / cites work: Asymptotic Solution of Stiff PDEs with the CSP Method: The Reaction Diffusion Equation / rank
 
Normal rank
Property / cites work
 
Property / cites work: Geometric singular perturbation theory in biological practice / rank
 
Normal rank
Property / cites work
 
Property / cites work: Geometry of the Computational Singular Perturbation Method / rank
 
Normal rank
Property / cites work
 
Property / cites work: Glycolysis in saccharomyces cerevisiae: algorithmic exploration of robustness and origin of oscillations / rank
 
Normal rank
Property / cites work
 
Property / cites work: Physical understanding of complex multiscale biochemical models via algorithmic simplification: glycolysis in saccharomyces cerevisiae / rank
 
Normal rank
Property / cites work
 
Property / cites work: Algorithmic asymptotic analysis of the NF-\(\kappa\mathrm B\) signaling system / rank
 
Normal rank
Property / cites work
 
Property / cites work: Multiple time scale dynamics / rank
 
Normal rank
Property / cites work
 
Property / cites work: The ``hidden'' dynamics of the Rössler attractor / rank
 
Normal rank
Property / cites work
 
Property / cites work: Asymptotic analysis of a target-mediated drug disposition model: algorithmic and traditional approaches / rank
 
Normal rank
Property / cites work
 
Property / cites work: Dynamics of target-mediated drug disposition: how a drug reaches its target / rank
 
Normal rank
Property / cites work
 
Property / cites work: Analysis of Kinetic Reaction Mechanisms / rank
 
Normal rank
Property / cites work
 
Property / cites work: Higher order corrections in the approximation of low-dimensional manifolds and the construction of simplified problems with the CSP method / rank
 
Normal rank
Property / cites work
 
Property / cites work: Topics in mathematical pharmacology / rank
 
Normal rank
Property / cites work
 
Property / cites work: Computational singular perturbation analysis of stochastic chemical systems with stiffness / rank
 
Normal rank
Property / cites work
 
Property / cites work: Analysis of the computational singular perturbation reduction method for chemical kinetics / rank
 
Normal rank
Property / cites work
 
Property / cites work: Fast and Slow Dynamics for the Computational Singular Perturbation Method / rank
 
Normal rank
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Asymptotic analysis of a TMDD model: when a reaction contributes to the destruction of its product
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    Asymptotic analysis of a TMDD model: when a reaction contributes to the destruction of its product (English)
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    1 March 2019
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    Target-mediated drug disposition (TMDD) refers to the interaction, \textit{in vivo}, between a drug and a biological receptor which subsequently form a drug-receptor complex. That complex represents the active configuration of the drug and is crucial to both the pharmacodynamics and the pharmacokinetics thereof. A modelling framework for TMDD was established in [\textit{D. E. Mager} and \textit{W. J. Jusko}, ``General pharmacokinetic model for drugs exhibiting target-mediated drug disposition'', J. Pharmacokinet. Pharmacodyn. 28, No. 6, 507--532 (2001; \url{doi:10.1023/a:1014414520282})]; their differential equation model consists of a central compartment (blood plasma) and a peripheral compartment, the tissue, and assumes first-order absorption from a depot compartment. Binding between the drug, or ligand, and the receptor (target) occurs in the central compartment; ligand is allowed to move between compartments. Subsequent modifications of that standard model included varying numbers of compartments, the absence of absorption, the presence of multiple drugs or receptors, and autoregulation; a review can be found in [\textit{P. Dua}, \textit{E. Hawkins} and \textit{P. H. van der Graaf}, ``A tutorial on target-mediated drug disposition (TMDD) models'', Pharmacomet. Syst. Pharmacol. 4, No. 6, 324--337 (2015; \url{doi:10.1002/psp4.41})]. Common to these models is a time scale separation which is due to ligand-receptor binding being fast, while the elimination of ligand is slow [\textit{L. Gibiansky} et al., ``Approximations of the target-mediated drug disposition model and identifiability of model parameters'', J. Pharmacokin. Pharmacodyn. 35, No. 5, 573--591 (2008; \url{doi:10.1007/s10928-008-9102-8})]; that separation prompted the construction of reduced models on the basis of a quasi-steady-state approximation (QSSA) or a partial equilibrium approximation (PEA) [Dua, Hawkins and van der Graaf, loc. cit.]. \par Recently, \textit{L. A. Peletier} and \textit{J. Gabrielsson} [``Dynamics of target-mediated drug disposition: characteristic profiles and parameter identification'', J. Pharmacokinet. Pharmacodyn. 39, No. 5, 429--451 (2012; \url{doi:10.1007/s10928-012-9260-6})] identified four distinct phases, which characterise different states of drug disposition, in a one-compartment TMDD model. Here, the authors investigate whether the same phases are observed in a two-compartment model with first-order absorption, in generalisation of prior work by \textit{D. G. Patsatzis} et al. [Bull. Math. Biol. 78, No. 6, 1121--1161 (2016; Zbl 1348.92075)]. \par The authors' analysis is based on the algorithmic methodology of Computational Singular Perturbation (CSP) [\textit{S. H. Lam} and the second author, ``The CSP method for simplifying kinetics'', Int. J. Chem. Kinet. 26, No. 4, 461--486 (1994; \url{doi:10.1002/kin.550260408})]. In the process, they show that the dynamics of their two-compartment TMDD model evolves mainly on two low-dimensional manifolds in phase space, interspersed with rapid transient phases, in analogy to the corresponding one-compartment model. Moreover, they assess in detail the dependence of that dynamics on various rate constants; in particular, they clarify the counterintuitive observation that an increase in the rate of transfer of ligand from tissue to the central compartment increases the depletion rate of ligand. Finally, and interestingly, they argue that a traditional QSSA or PEA may not always lead to a valid reduction in the model considered here.
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    target-mediated drug disposition (TMDD)
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    perturbation analysis
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    quasi-steady-state approximation (QSSA)
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    partial equilibrium approximation (PEA)
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    computational singular perturbation (CSP)
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