topologyGSA (Q27071): Difference between revisions

@@ description / en / description / en @@
+Gene Set Analysis Exploiting Pathway Topology
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+topologyGSA
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+Gabriele Sales
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@@ Property / description @@
+Using Gaussian graphical models we propose a novel approach to             perform pathway analysis using gene expression. Given the             structure of a graph (a pathway) we introduce two statistical             tests to compare the mean and the concentration matrices between             two groups. Specifically, these tests can be performed on the             graph and on its connected components (cliques). The package is             based on the method described in Massa M.S., Chiogna M., Romualdi             C. (2010) <doi:10.1186/1752-0509-4-121>.
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+Sofia Massa
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+GNU General Public License, version 3.0
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+Gene set analysis exploiting the topology of a pathway
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+https://github.com/cran/topologyGSA
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+swh:1:snp:e6e3e4286159f16c615838679d414076bcb19d64
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+Software:27071

Latest revision as of 17:01, 21 March 2024

Gene Set Analysis Exploiting Pathway Topology

Language	Label	Description	Also known as
English	topologyGSA	Gene Set Analysis Exploiting Pathway Topology

Statements

instance of

R package

0 references

software version identifier

1.4.7

publication date

7 July 2021

0 references

1.0.2

publication date

10 November 2011

0 references

1.0.3

publication date

22 December 2011

0 references

1.0

publication date

24 June 2011

0 references

1.1.0

publication date

18 July 2012

0 references

1.2.0

publication date

1 March 2013

0 references

1.2.1

publication date

26 June 2013

0 references

1.4.0

publication date

23 October 2013

0 references

1.4.1

publication date

19 November 2013

0 references

1.4.2

publication date

12 December 2013

0 references

1.4.3

publication date

26 March 2014

0 references

1.4.4

publication date

2 August 2014

0 references

1.4.5

publication date

9 July 2015

0 references

1.4.6

publication date

22 September 2016

0 references

1.5.0

publication date

25 September 2023

0 references

programmed in

R

0 references

MaRDI profile type

MaRDI software profile

0 references

last update

25 September 2023

0 references

maintained by

Gabriele Sales

0 references

description

Using Gaussian graphical models we propose a novel approach to perform pathway analysis using gene expression. Given the structure of a graph (a pathway) we introduce two statistical tests to compare the mean and the concentration matrices between two groups. Specifically, these tests can be performed on the graph and on its connected components (cliques). The package is based on the method described in Massa M.S., Chiogna M., Romualdi C. (2010) <doi:10.1186/1752-0509-4-121>.

0 references

author

Sofia Massa

0 references

copyright license

GNU General Public License, version 3.0

0 references

imports

graph

0 references

gRbase

software version identifier