Regression analysis for microbiome compositional data

DOI10.1214/16-AOAS928zbMath1398.62346arXiv1603.00974MaRDI QIDQ312961

Pixu Shi, Hongzhe Li, Anru Zhang

Publication date: 9 September 2016

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1603.00974

zbMATH Keywords

confidence intervalsregularizationmodel selectionhigh dimensionasymptotic multivariate normal distributioncompositional coherencecoordinate descent method of multiplierslog-contrast model

Mathematics Subject Classification ID

Estimation in multivariate analysis (62H12) Parametric tolerance and confidence regions (62F25) Ridge regression; shrinkage estimators (Lasso) (62J07) Applications of statistics to biology and medical sciences; meta analysis (62P10)

Related Items (27)

Penalized and constrained LAD estimation in fixed and high dimension ⋮ Regression analysis for microbiome compositional data ⋮ Unnamed Item ⋮ Compositional knockoff filter for high‐dimensional regression analysis of microbiome data ⋮ Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data ⋮ It's All Relative: Regression Analysis with Compositional Predictors ⋮ Three approaches to supervised learning for compositional data with pairwise logratios ⋮ Globally Adaptive Longitudinal Quantile Regression With High Dimensional Compositional Covariates ⋮ Bayesian compositional regression with structured priors for microbiome feature selection ⋮ A dual semismooth Newton based augmented Lagrangian method for large-scale linearly constrained sparse group square-root Lasso problems ⋮ Identification of microbial features in multivariate regression under false discovery rate control ⋮ A Bayesian framework for identifying consistent patterns of microbial abundance between body sites ⋮ The Integrated Nested Laplace Approximation for Fitting Dirichlet Regression Models ⋮ Robust Signal Recovery for High-Dimensional Linear Log-Contrast Models with Compositional Covariates ⋮ A new parameterization for elliptically symmetric angular Gaussian distributions of arbitrary dimension ⋮ A folded model for compositional data analysis ⋮ A review of compositional data analysis and recent advances ⋮ Robust regression with compositional covariates ⋮ Flexible non-parametric regression models for compositional data ⋮ Compositional data: the sample space and its structure ⋮ Rare Feature Selection in High Dimensions ⋮ Log-Contrast Regression with Functional Compositional Predictors: Linking Preterm Infant's Gut Microbiome Trajectories to Neurobehavioral Outcome ⋮ A Bayesian model of microbiome data for simultaneous identification of covariate associations and prediction of phenotypic outcomes ⋮ Algorithms for Fitting the Constrained Lasso ⋮ Some aspects of non-standard multivariate analysis ⋮ Robust logistic zero-sum regression for microbiome compositional data ⋮ A decomposition method for Lasso problems with zero-sum constraint

Uses Software

• CVX
• MEGAN

Cites Work

• On asymptotically optimal confidence regions and tests for high-dimensional models
• Variable selection in regression with compositional covariates
• Exact post-selection inference, with application to the Lasso
• Regression analysis for microbiome compositional data
• Statistical significance in high-dimensional linear models
• Confidence Intervals and Hypothesis Testing for High-Dimensional Regression
• Scaled sparse linear regression
• Estimation and Accuracy After Model Selection
• Unnamed Item
• Unnamed Item
• Unnamed Item

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