Parametric FEM for geometric biomembranes

DOI10.1016/J.JCP.2009.12.036zbMath1307.76049OpenAlexW2163224702MaRDI QIDQ964249

Ricardo H. Nochetto, Andrea Bonito, M. Sebastian Pauletti

Publication date: 15 April 2010

Published in: Journal of Computational Physics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jcp.2009.12.036

zbMATH Keywords

gradient flowmoving finite elementsgeometric flowbiomembranered blood cellbending energyisoparametric elementsHelfrichshape differential calculusWillmore

Mathematics Subject Classification ID

Finite element, Rayleigh-Ritz and Galerkin methods for boundary value problems involving PDEs (65N30) Developmental biology, pattern formation (92C15) Finite element methods applied to problems in fluid mechanics (76M10) Physiological flows (76Z05)

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Uses Software

• ALBERTA

Cites Work

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• A finite element method for surface diffusion: the parametric case.
• An algorithm for evolutionary surfaces
• Computational parametric Willmore flow
• Threshold dynamics for high order geometric motions
• Discrete gradient flows for shape optimization and applications
• Static equilibrium configurations of a model red blood cell
• On the variational theory of cell-membrane equilibria
• Design of adaptive finite element software. The finite element toolbox ALBERTA. With CD-ROM
• A phase field approach in the numerical study of the elastic bending energy for vesicle membranes
• A level set formulation for Willmore flow
• A recursive approach to local mesh refinement in two and three dimensions
• Fluid films with curvature elasticity
• An introduction to continuum mechanics
• A finite element method for surface restoration with smooth boundary conditions
• Error analysis of a finite element method for the Willmore flow of graphs
• An algorithm for the elastic flow of surfaces
• Simulating the deformation of vesicle membranes under elastic bending energy in three dimensions
• Geometrically Consistent Mesh Modification
• Dynamics of Biomembranes: Effect of the Bulk Fluid
• AFEM for the Laplace-Beltrami operator on graphs: Design and conditional contraction property
• Computation of geometric partial differential equations and mean curvature flow
• Higher-Order Finite Element Methods and Pointwise Error Estimates for Elliptic Problems on Surfaces
• The Equations of Mechanical Equilibrium of a Model Membrane
• A Posteriori Error Analysis for the Mean Curvature Flow of Graphs
• Parametric Approximation of Willmore Flow and Related Geometric Evolution Equations
• An Adaptive Finite Element Method for the Laplace–Beltrami Operator on Implicitly Defined Surfaces
• Convergence of Adaptive Finite Element Methods for General Second Order Linear Elliptic PDEs
• Finite element discretization of the Navier-Stokes equations with a free capillary surface

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