Non-parametric estimation of population size changes from the site frequency spectrum

DOI10.1515/SAGMB-2017-0061zbMath1398.92191OpenAlexW2949526550WikidataQ89052642 ScholiaQ89052642MaRDI QIDQ1672826

Berit Lindum Waltoft, Asger Hobolth

Publication date: 11 September 2018

Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL: https://pure.au.dk/ws/files/153336834/_Statistical_Applications_in_Genetics_and_Molecular_Biology_Non_parametric_estimation_of_population_size_changes_from_the_site_frequency_spectrum.pdf

zbMATH Keywords

regularizationpopulation sizesite frequency spectrumcoalescent theory

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Nonparametric estimation (62G05) Problems related to evolution (92D15) Genetics and epigenetics (92D10)

Related Items (1)

The Wright-Fisher site frequency spectrum as a perturbation of the coalescent's

Uses Software

• TANGO
• phylodyn

Cites Work

• Descartes' rule of signs and the identifiability of population demographic models from genomic variation data
• Can one learn history from the allelic spectrum?
• A note on distributions of times to coalescence, under time-dependent population size
• Improving ultimate convergence of an augmented Lagrangian method
• Gaussian Process‐Based Bayesian Nonparametric Inference of Population Size Trajectories from Gene Genealogies
• Non-equilibrium allele frequency spectra via spectral methods
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