The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior
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Publication:2490517
DOI10.1016/j.compbiolchem.2005.10.007zbMath1086.92018WikidataQ39216009 ScholiaQ39216009MaRDI QIDQ2490517
Chris D. Cox, Gregory D. Peterson, Michael L. Simpson, James M. McCollum, Nagiza F. Samatova
Publication date: 16 May 2006
Published in: Computational Biology and Chemistry (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.compbiolchem.2005.10.007
Gillespie algorithm; Stochastic simulation; Systems biology; Gene networks; Modeling biochemical systems
65C20: Probabilistic models, generic numerical methods in probability and statistics
65C05: Monte Carlo methods
92C40: Biochemistry, molecular biology
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Uses Software
Cites Work
- Two-stage stochastic Runge-Kutta methods for stochastic differential equations
- Model based conjectures on mammalian clock controversies
- Frequency domain chemical Langevin analysis of stochasticity in gene transcriptional regulation
- Stochastic approaches for modelling in vivo reactions
- The MATLAB ODE Suite
