Frequency domain chemical Langevin analysis of stochasticity in gene transcriptional regulation

DOI10.1016/J.JTBI.2004.04.017MaRDI QIDQ2189299zbMATH OpenOpenAlexWikidataFDO

Authors Michael L. Simpson, Chris D. Cox, Gary S. Sayler

Publication date 15 June 2020

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2004.04.017

zbMATH Keywords

stochastic simulationchemical Langevin equationgene circuit analysisgene circuit noise

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10)

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Cited in

(9)

• A model of gene expression based on random dynamical systems reveals modularity properties of gene regulatory networks
• Most probable dynamics of a genetic regulatory network under stable Lévy noise
• The mean frequency of transcriptional bursting and its variation in single cells
• Stochastic reaction networks with input processes: analysis and application to gene expression inference
• Influence of complex promoter structure on gene expression
• The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior
• Transcriptional stochasticity in gene expression
• Modeling stochastic gene expression under repression
• Signatures of nonlinearity in single cell noise-induced oscillations

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