Multiscale stochastic modelling of gene expression
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Cites work
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- A multiple time interval finite state projection algorithm for the solution to the chemical master equation
- Analysis of multiscale methods for stochastic differential equations
- Exact and approximate distributions of protein and mRNA levels in the low-copy regime of gene expression
- Limit behavior of two-time-scale diffusions revisited
- Markovian modelling of gene product synthesis
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- Modeling stochasticity in gene regulation: Characterization in the terms of the underlying distribution function
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- Numerical Inversion of Laplace Transforms by Relating Them to the Finite Fourier Cosine Transform
- Numerical inversion of the Laplace transform: a survey and comparison of methods
- Numerical techniques for multi-scale dynamical systems with stochastic effects
- On Choosing and Bounding Probability Metrics
- Perturbation methods in applied mathematics
- Stochastic reduction method for biological chemical kinetics using time-scale separation
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Cited in
(39)- Asymptotic behavior of gene expression with complete memory and two-time scales based on the chemical Langevin equations
- Path integral approach to generating functions for multistep post-transcription and post-translation processes and arbitrary initial conditions
- Reduction of a stochastic model of gene expression: Lagrangian dynamics gives access to basins of attraction as cell types and metastabilty
- Heavy-tailed distributions in a stochastic gene autoregulation model
- Chemical master equation and Langevin regimes for a gene transcription model
- Exact and WKB-approximate distributions in a gene expression model with feedback in burst frequency, burst size, and protein stability
- Approximation and inference methods for stochastic biochemical kinetics -- a tutorial review
- scientific article; zbMATH DE number 4055432 (Why is no real title available?)
- A data-driven method to learn a jump diffusion process from aggregate biological gene expression data
- Limits of noise for autoregulated gene expression
- A stochastic approach to multi-gene expression dynamics
- Stationary and time-dependent molecular distributions in slow-fast feedback circuits
- Dimensionality reduction via path integration for computing mRNA distributions
- Gene expression noise is affected differentially by feedback in burst frequency and burst size
- A stochastic analysis of autoregulation of gene expression
- Modeling stochasticity in gene regulation: Characterization in the terms of the underlying distribution function
- Adiabatic reduction of a model of stochastic gene expression with jump Markov process
- Transcriptional bursting diversifies the behaviour of a toggle switch: hybrid simulation of stochastic gene expression
- Fluctuating-rate model with multiple gene states
- A stochastic model of gene transcription: an application to L1 retrotransposition events
- Inference on autoregulation in gene expression with variance-to-mean ratio
- Transcriptional stochasticity in gene expression
- Molecular distributions in gene regulatory dynamics
- Stochastic modelling of gene regulatory networks
- Models of stochastic gene expression and Weyl algebra
- Stochastic analysis of a complex gene-expression model
- A geometric analysis of fast-slow models for stochastic gene expression
- A kinetic finite volume discretization of the multidimensional PIDE model for gene regulatory networks
- Assigning probabilities to qualitative dynamics of gene regulatory networks
- ON THE RELATION BETWEEN FLUCTUATION AND SCALING-LAW IN GENE EXPRESSION TIME SERIES FROM YEAST TO HUMAN
- Markov process modelling of gene regulation
- Solving the chemical master equation for monomolecular reaction systems and beyond: a Doi-Peliti path integral view
- Two-layer mathematical modeling of gene expression: incorporating DNA-level information and system dynamics
- Frequency domain chemical Langevin analysis of stochasticity in gene transcriptional regulation
- Modelling Nonstationary Gene Regulatory Processes
- Modelling gene expression using stochastic simulation
- Time-dependent propagators for stochastic models of gene expression: an analytical method
- A Fokker-Planck approach to the study of robustness in gene expression
- Analytical Time-Dependent Distributions for Gene Expression Models With Complex Promoter Switching Mechanisms
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