Stochastic hybrid systems for studying biochemical processes

DOI10.1098/RSTA.2010.0211zbMath1211.37117OpenAlexW2147556100WikidataQ37797774 ScholiaQ37797774MaRDI QIDQ2997245

Abhyudai Singh, João P. Hespanha

Publication date: 6 May 2011

Published in: Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1098/rsta.2010.0211

zbMATH Keywords

moment closuregene regulatory networksstochastic hybrid systemsnegative feedbackstochastic chemical kineticsgene autoregulation

Mathematics Subject Classification ID

Classical flows, reactions, etc. in chemistry (92E20) Dynamical systems in biology (37N25) Biochemistry, molecular biology (92C40) Ordinary differential equations and systems with randomness (34F05)

Related Items (20)

Protein noise and distribution in a two-stage gene-expression model extended by an mRNA inactivation loop ⋮ Stochastic modelling and control of antibiotic subtilin production ⋮ Model Checking of Biological Systems ⋮ Analyzing Oscillatory Behavior with Formal Methods ⋮ Transcriptional bursting diversifies the behaviour of a toggle switch: hybrid simulation of stochastic gene expression ⋮ Moment-based analysis of stochastic hybrid systems with renewal transitions ⋮ Robust control for uncertain impulsive systems with input constraints and external disturbance ⋮ Self‐regulation in a stochastic model of chemical self‐replication ⋮ Hybrid Modelling in Biology: a Classification Review ⋮ Unnamed Item ⋮ Stability analysis for stochastic hybrid systems: a survey ⋮ Approximately bisimilar symbolic models for randomly switched stochastic systems ⋮ Theory of hybrid dynamical systems and its applications to biological and medical systems ⋮ Stochastic hybrid models of gene regulatory networks -- a PDE approach ⋮ Push-forward method for piecewise deterministic biochemical simulations ⋮ Moment closure approximations for stochastic kinetic models with rational rate laws ⋮ Moment Analysis of Linear Time-Varying Dynamical Systems with Renewal Transitions ⋮ Approximations of piecewise deterministic Markov processes and their convergence properties ⋮ Automated verification and synthesis of stochastic hybrid systems: a survey ⋮ Decisiveness of stochastic systems and its application to hybrid models

Uses Software

• StochDynTools

Cites Work

• Hybrid modeling of noise reduction by a negatively autoregulated system
• A derivative matching approach to moment closure for the stochastic logistic model
• Evolutionary Bioinformatics

This page was built for publication: Stochastic hybrid systems for studying biochemical processes