Comparative Genomics on Artificial Life

DOI10.1007/978-3-319-40189-8_4zbMath1478.92129OpenAlexW2501571505MaRDI QIDQ3188238

Priscila Biller, Guillaume Beslon, Carole Knibbe, Eric Tannier

Publication date: 17 August 2016

Published in: Pursuit of the Universal (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-3-319-40189-8_4

zbMATH Keywords

rearrangementsbenchmarkcomparative genomics\textit{in silico} experimental evolution

Mathematics Subject Classification ID

Problems related to evolution (92D15) Neural networks for/in biological studies, artificial life and related topics (92B20) Genetics and epigenetics (92D10) Computational methods for problems pertaining to biology (92-08)

Related Items (6)

A 3.5-Approximation Algorithm for Sorting by Intergenic Transpositions ⋮ A new approach for the reversal distance with indels and moves in intergenic regions ⋮ Signed rearrangement distances considering repeated genes, intergenic regions, and indels ⋮ Classifying the post-duplication fate of paralogous genes ⋮ Reversal distance on genomes with different gene content and intergenic regions information ⋮ Reversals distance considering flexible intergenic regions sizes

Uses Software

• SimPhy
• INDELible
• ALF
• Aevol

Cites Work

• Aevol
• Estimating the expected reversal distance after a fixed number of reversals
• A phase transition in the random transposition random walk
• Bayesian Phylogenetic Inference from Animal Mitochondrial Genome Arrangements
• Approximating the true evolutionary distance between two genomes
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• Unnamed Item
• Unnamed Item

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