GENMARK: Parallel gene recognition for both DNA strands

DOI10.1016/0097-8485(93)85004-VzbMath0812.92008WikidataQ126988126 ScholiaQ126988126MaRDI QIDQ4326274

Mark Borodovsky, James McIninch

Publication date: 14 May 1995

Published in: Computers & Chemistry (Search for Journal in Brave)

zbMATH Keywords

DNA strandsBayesian algorithmlarge-scale DNA sequencingnon-homogeneous Markov chain modelpredicting gene locationsprotein-coding regions

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20) Computational methods for problems pertaining to biology (92-08)

Related Items (10)

Duality between the local score of one sequence and constrained hidden Markov model ⋮ Flux through a Markov chain ⋮ Uniform accuracy of the maximum likelihood estimates for probabilistic models of biological sequences ⋮ A Markovian approach for the prediction of mouse isochores ⋮ An unusual 500,000 bases long oscillation of guanine and cytosine content in human chromosome 21 ⋮ Effective hidden Markov models for detecting splicing junction sites in DNA sequences ⋮ Numericalization of the self adaptive spectral rotation method for coding region prediction ⋮ GeneMark ⋮ Classifying molecular sequences using a linkage graph with their pairwise similarities ⋮ Fitting DNA sequences through log-linear modelling with linear constraints

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