Effective hidden Markov models for detecting splicing junction sites in DNA sequences

DOI10.1016/S0020-0255(01)00160-8MaRDI QIDQ5956868zbMATH OpenOpenAlexFDO

Authors Michael M. Yin, Jason T. L. Wang

Publication date 12 May 2002

Published in Information Sciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/s0020-0255(01)00160-8

zbMATH Keywords

bioiformaticscomputational biologygene findinghidden Markov modelssplicing junction sitestables

Mathematics Subject Classification ID

Numerical analysis or methods applied to Markov chains (65C40) Software, source code, etc. for problems pertaining to biology (92-04) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

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Cites work

• GENMARK: Parallel gene recognition for both DNA strands

Cited in

(9)

• Classification of splice-junction sequences via weighted position specific scoring approach
• A classification-based prediction model of messenger RNA polyadenylation sites
• A two-stage exon recognition model based on synergetic neural network
• Basecalling using hidden Markov models
• Research on the application and method of distinguishing splice acceptor sites in homo sapiens gene sequences
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• An improved voting algorithm for planted \((l, d)\) motif search
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