Detecting Homogeneous Segments in DNA Sequences by Using Hidden Markov Models

DOI10.1111/1467-9876.00191MaRDI QIDQ4485118zbMATH OpenOpenAlexWikidataFDO

Authors Richard J. Boys, Daniel A. Henderson, Darren J. Wilkinson

Publication date 5 June 2000

Published in Journal of the Royal Statistical Society Series C: Applied Statistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1111/1467-9876.00191

zbMATH Keywords

Bayesian estimationbioinformaticschimpanzeedata augmentationdeoxyribonucleic acid sequenceshidden Markov modelhuman alpha-fetoprotein geneintron 7Markov chain Monte Carlo methods

Mathematics Subject Classification ID

Markov processes (60J99) Bayesian inference (62F15) Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

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• A Bayesian Approach to DNA Sequence Segmentation
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• Bayesian hidden Markov models in DNA sequence segmentation using R: the case of Simian Vacuolating virus (SV40)
• Bayesian analysis of isochores
• A generalized mixture model applied to diabetes incidence data
• A Heuristic Bayesian Method for Segmenting DNA Sequence Alignments and Detecting Evidence for Recombination and Gene Conversion
• Comparing the performance of a reversible jump Markov chain Monte Carlo algorithm for DNA sequences alignment
• Statistical methods for DNA sequence segmentation
• Effective hidden Markov models for detecting splicing junction sites in DNA sequences
• A sparse matrix approach to Bayesian computation in large linear models
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