TGCnA: temporal gene coexpression network analysis using a low-rank plus sparse framework

DOI10.1080/02664763.2019.1667311OpenAlexW2973243167MaRDI QIDQ5037038

Yutong Lai, Jin-yu Li, Chi Zhang, Qi Zhang

Publication date: 25 February 2022

Published in: Journal of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1080/02664763.2019.1667311

zbMATH Keywords

WGCNAcovariance matrix estimationKEGGgene coexpressionlow-rank plus sparsetranscriptomic time course

Mathematics Subject Classification ID

Applications of statistics (62Pxx)

Related Items (2)

TGCnA ⋮ Multivariate response regression with low-rank and generalized sparsity

Uses Software

• WGCNA
• KEGG
• GitHub
• clusterProfiler
• COXPRESdb
• GeneFriends
• PLANEX

Cites Work

• High dimensional covariance matrix estimation using a factor model
• Reexamination of an information geometric construction of entropic indicators of complexity
• A universal prior for integers and estimation by minimum description length
• Modeling by shortest data description
• Bayesian nonlinear model selection for gene regulatory networks
• Adaptive Thresholding for Sparse Covariance Matrix Estimation
• Maximum likelihood identification of Gaussian autoregressive moving average models
• A General Framework for Weighted Gene Co-Expression Network Analysis
• Large Covariance Estimation by Thresholding Principal Orthogonal Complements

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