A GLM-based latent variable ordination method for microbiome samples

DOI10.1111/BIOM.12775MaRDI QIDQ3119859zbMATH OpenOpenAlexWikidataFDO

Authors

Publication date 13 March 2019

Published in Biometrics (Search for Journal in Brave)

Full work available at URL http://europepmc.org/articles/pmc6173969

zbMATH Keywords

factor modelsmicrobiomesampleszero-inflated models16S sequencing

Mathematics Subject Classification ID

Factor analysis and principal components; correspondence analysis (62H25) Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

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Cited in

(7)

• Negative binomial factor regression with application to microbiome data analysis
• Zero‐inflated Poisson factor model with application to microbiome read counts
• A zero-inflated non-negative matrix factorization for the deconvolution of mixed signals of biological data
• A Zero-Inflated Logistic Normal Multinomial Model for Extracting Microbial Compositions
• Generalized linear models with linear constraints for microbiome compositional data
• Model-Based Microbiome Data Ordination: A Variational Approximation Approach
• Adaptive gPCA: a method for structured dimensionality reduction with applications to microbiome data

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