Variable selection for sparse Dirichlet-multinomial regression with an application to microbiome data analysis
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Publication:1951541
DOI10.1214/12-AOAS592zbMath1454.62317arXiv1305.5355OpenAlexW3098806227WikidataQ30709584 ScholiaQ30709584MaRDI QIDQ1951541
Publication date: 6 June 2013
Published in: The Annals of Applied Statistics (Search for Journal in Brave)
Full work available at URL: https://arxiv.org/abs/1305.5355
Nonparametric regression and quantile regression (62G08) Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10)
Related Items (28)
IFAA: Robust Association Identification and Inference for Absolute Abundance in Microbiome Analyses ⋮ Variable selection in general multinomial logit models ⋮ A phylogenetic scan test on a Dirichlet-tree multinomial model for microbiome data ⋮ Variational Bayesian inference for association over phylogenetic trees for microorganisms ⋮ Splitting models for multivariate count data ⋮ A hierarchical Bayesian approach for detecting global microbiome associations ⋮ Latent Network Estimation and Variable Selection for Compositional Data Via Variational EM ⋮ A modified multinomial baseline logit model with logit functions having different covariates ⋮ Bayesian mixed effects models for zero-inflated compositions in microbiome data analysis ⋮ Compositional knockoff filter for high‐dimensional regression analysis of microbiome data ⋮ A Dirichlet-Tree Multinomial Regression Model for Associating Dietary Nutrients with Gut Microorganisms ⋮ Learning to increase the power of conditional randomization tests ⋮ A Bayesian group selection with compositional responses for analysis of radiologic tumor proportions and their genomic determinants ⋮ Subject-specific Dirichlet-multinomial regression for multi-district microbiota data analysis ⋮ Clustering multivariate count data via Dirichlet-multinomial network fusion ⋮ MIMIX: A Bayesian Mixed-Effects Model for Microbiome Data From Designed Experiments ⋮ Bayesian Graphical Compositional Regression for Microbiome Data ⋮ Bayesian sparse multivariate regression with asymmetric nonlocal priors for microbiome data analysis ⋮ Innovated scalable efficient inference for ultra-large graphical models ⋮ A Logistic Normal Multinomial Regression Model for Microbiome Compositional Data Analysis ⋮ Statistical models and computational algorithms for discovering relationships in microbiome data ⋮ Modeling microbial abundances and dysbiosis with beta-binomial regression ⋮ Logistic Normal Multinomial Factor Analyzers for Clustering Microbiome Data ⋮ The multivariate Dirichlet-multinomial distribution and its application in forensic genetics to adjust for subpopulation effects using the \(\theta\)-correction ⋮ A nonparametric spatial test to identify factors that shape a microbiome ⋮ A Bayesian model of microbiome data for simultaneous identification of covariate associations and prediction of phenotypic outcomes ⋮ MCEN: a method of simultaneous variable selection and clustering for high-dimensional multinomial regression ⋮ Nonsparse Learning with Latent Variables
Uses Software
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- The composite absolute penalties family for grouped and hierarchical variable selection
- Variable selection for multicategory SVM via adaptive sup-norm regularization
- Multilevel zero-inflated negative binomial regression modeling for over-dispersed count data with extra zeros
- Multi-level zero-inflated Poisson regression modelling of correlated count data with excess zeros
- The Group Lasso for Logistic Regression
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