A logistic normal multinomial regression model for microbiome compositional data analysis

DOI10.1111/BIOM.12079zbMATH Open1288.62171OpenAlexW1503352355WikidataQ30677919 ScholiaQ30677919MaRDI QIDQ5408029FDOQ5408029

Authors:

Publication date: 8 April 2014

Published in: Biometrics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1111/biom.12079

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zbMATH Keywords

Markov chain Monte Carlovariable selectionregularizationover-dispersionhierarchical models

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Monte Carlo methods (65C05) Numerical analysis or methods applied to Markov chains (65C40) Generalized linear models (logistic models) (62J12)

Cites Work

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• Model Selection and Estimation in Regression with Grouped Variables
• Regularized multivariate regression for identifying master predictors with application to integrative genomics study of breast cancer
• Variable selection for sparse Dirichlet-multinomial regression with an application to microbiome data analysis
• The Group Lasso for Logistic Regression
• Statistical Interpretation of Species Composition
• Title not available (Why is that?)

Cited In (47)

• Rare feature selection in high dimensions
• LRBmat: a novel gut microbial interaction and individual heterogeneity inference method for colorectal cancer
• Bayesian modeling of interaction between features in sparse multivariate count data with application to microbiome study
• Variable selection for sparse Dirichlet-multinomial regression with an application to microbiome data analysis
• Partial linear regression of compositional data
• A mixture of logistics skew-normal multinomial models
• Kernel-penalized regression for analysis of microbiome data
• A review on probabilistic models used in microbiome studies
• A Bayesian model of microbiome data for simultaneous identification of covariate associations and prediction of phenotypic outcomes
• Multisample estimation of bacterial composition matrices in metagenomics data
• Bayesian graphical compositional regression for microbiome data
• Identification of microbial features in multivariate regression under false discovery rate control
• Power transformations of relative count data as a shrinkage problem
• Microbiome Subcommunity Learning with Logistic-Tree Normal Latent Dirichlet Allocation
• A GLM-based latent variable ordination method for microbiome samples
• A semiparametric model for between‐subject attributes: Applications to beta‐diversity of microbiome data
• Joint modeling of zero‐inflated longitudinal proportions and time‐to‐event data with application to a gut microbiome study
• Modeling association in microbial communities with clique loglinear models
• A baseline category logit model for assessing competing strains of \textit{Rhizobium} bacteria
• Zero‐inflated Poisson factor model with application to microbiome read counts
• Globally Adaptive Longitudinal Quantile Regression With High Dimensional Compositional Covariates
• Splitting models for multivariate count data
• The mixed model for the analysis of a repeated-measurement multivariate count data
• Bayesian variable selection for high-dimensional rank data
• Compositional Graphical Lasso Resolves the Impact of Parasitic Infection on Gut Microbial Interaction Networks in a Zebrafish Model
• Bayesian hierarchical models for high-dimensional mediation analysis with coordinated selection of correlated mediators
• Factor Augmented Inverse Regression and its Application to Microbiome Data Analysis
• Bayesian compositional regression with structured priors for microbiome feature selection
• A model for paired-multinomial data and its application to analysis of data on a taxonomic tree
• A folded model for compositional data analysis
• Flexible non-parametric regression models for compositional data
• Regression analysis for microbiome compositional data
• A Zero-Inflated Logistic Normal Multinomial Model for Extracting Microbial Compositions
• Modeling microbial abundances and dysbiosis with beta-binomial regression
• Logistic Normal Multinomial Factor Analyzers for Clustering Microbiome Data
• Compositional knockoff filter for high‐dimensional regression analysis of microbiome data
• Log-Contrast Regression with Functional Compositional Predictors: Linking Preterm Infant's Gut Microbiome Trajectories to Neurobehavioral Outcome
• Variable selection in regression with compositional covariates
• Testing for differential abundance in compositional counts data, with application to microbiome studies
• Generalized linear models with linear constraints for microbiome compositional data
• Scalable estimation and regularization for the logistic normal multinomial model
• MIMIX: a Bayesian mixed-effects model for microbiome data from designed experiments
• Bayesian mixed effects models for zero-inflated compositions in microbiome data analysis
• A zero-inflated beta-binomial model for microbiome data analysis
• Bayesian sparse multivariate regression with asymmetric nonlocal priors for microbiome data analysis
• A Dirichlet-Tree Multinomial Regression Model for Associating Dietary Nutrients with Gut Microorganisms
• Prediction analysis for microbiome sequencing data

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