Ab initio bubble-driven denaturation of double-stranded DNA: self-mechanical theory

DOI10.1016/J.JTBI.2016.04.026MaRDI QIDQ738647zbMATH OpenOpenAlexWikidataFDO

Authors Victor K. Kuetche

Publication date 5 September 2016

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2016.04.026

zbMATH Keywords

DNA-denaturationground state condensateself-mechanical theorytranscription bubblewaveguide channels

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)

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Cites work

• Bubble dynamics in DNA
• Cusp and loop soliton solutions of short-wave models for the Camassa-Holm and Degasperis-Procesi equations
• Exact Solution of the Korteweg—de Vries Equation for Multiple Collisions of Solitons
• scientific article; zbMATH DE number 3860529 (Why is no real title available?)
• scientific article; zbMATH DE number 2117215 (Why is no real title available?)
• Loop exponent in DNA bubble dynamics
• Loop Soliton Solutions of String Interacting with External Field
• Multi-loop soliton solutions and their interaction in the Degasperis-Procesi equation
• On worm-like chain models within the three-dimensional continuum mechanics framework
• Periodic solutions of the short pulse model equation
• Some periodic and solitary travelling-wave solutions of the short-pulse equation
• The \(N\)-soliton solution of the modified generalised Vakhnenko equation (a new nonlinear evolution equation).
• The Short Pulse Equation Is Integrable
• The two loop soliton solution of the Vakhnenko equation
• Unzipping DNAs: Towards the first step of replication

Cited in

(6)

• Unzipping DNAs: Towards the first step of replication
• Loop exponent in DNA bubble dynamics
• Bubble dynamics in DNA
• A model for structure and thermodynamics of ssDNA and dsDNA near a surface: A coarse grained approach
• Thermodynamics of DNA–RNA renaturation
• Phase transition as a mechanism of DNA opening for replication and transcription

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