Adaptive compressive learning for prediction of protein-protein interactions from primary sequence

DOI10.1016/J.JTBI.2011.05.023MaRDI QIDQ1783649zbMATH OpenOpenAlexWikidataFDO

Authors Xiao-Yong Pan, Yan Huang, Hong-Bin Shen, Ya-Nan Zhang

Publication date 21 September 2018

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2011.05.023

zbMATH Keywords

compressed sensingNyquist samplingprotein-protein interactions predictionsequential discrete representation

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Recommendations

• A novel method based on new adaptive LVQ neural network for predicting protein-protein interactions from protein sequences
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• Predicting protein-protein interactions by fusing various Chou's pseudo components and using wavelet denoising approach
• Predicting protein-protein interactions by a supervised learning classifier
• Prediction of protein-protein interaction by metasample-based sparse representation

Cites work

• A simple proof of the restricted isometry property for random matrices
• Compressed sensing
• High performance set of PseAAC and sequence based descriptors for protein classification
• Near-Optimal Signal Recovery From Random Projections: Universal Encoding Strategies?
• Signal Recovery From Random Measurements Via Orthogonal Matching Pursuit
• Stable signal recovery from incomplete and inaccurate measurements
• The restricted isometry property and its implications for compressed sensing
• Wrappers for feature subset selection

Cited in

(6)

• Predicting protein-protein interactions by fusing various Chou's pseudo components and using wavelet denoising approach
• Interrogating noise in protein sequences from the perspective of protein-protein interactions prediction
• Transcriptional protein-protein cooperativity in POU/HMG/DNA complexes revealed by normal mode analysis
• A novel conjoint triad auto covariance (CTAC) coding method for predicting protein-protein interaction based on amino acid sequence
• A novel method based on new adaptive LVQ neural network for predicting protein-protein interactions from protein sequences
• DNN-PPI: a large-scale prediction of protein-protein interactions based on deep neural networks

Describes a project that uses

Uses Software

• Cd-hit
• InterPreTS
• Negatome
• CRYSTALP2
• Hum-mPLoc
• Hum-PLoc
• Euk-mPLoc
• DIMA
• PIPE
• PseAAC
• LIBSVM
• HSEpred

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