Analyzing gene expression time-courses based on multi-resolution shape mixture model

DOI10.1016/J.MBS.2016.08.012MaRDI QIDQ338684zbMATH OpenOpenAlexWikidataFDO

Authors Ye He, Ying Li, Yu Zhang

Publication date 7 November 2016

Published in Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.mbs.2016.08.012

zbMATH Keywords

Bayesian information criterionglobal fractal scalelocal fractal scalemixture model clusteringmulti-resolution fractal feature

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10) Software, source code, etc. for problems pertaining to biology (92-04)

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Cites work

• scientific article; zbMATH DE number 3567782 (Why is no real title available?)
• Algorithm AS 136: A K-Means Clustering Algorithm
• Clustering by passing messages between data points
• Enhanced model-based clustering, density estimation, and discriminant analysis software:\newline MCLUST
• Estimating the dimension of a model
• How Many Clusters? Which Clustering Method? Answers Via Model-Based Cluster Analysis
• Model-Based Clustering, Discriminant Analysis, and Density Estimation
• Model-Based Gaussian and Non-Gaussian Clustering
• Multiresolution Approximations and Wavelet Orthonormal Bases of L 2 (R)
• Self-organizing maps of symbol strings
• Singularity detection and processing with wavelets

Cited in

(2)

• Bayesian modeling of factorial time-course data with applications to a bone aging gene expression study
• Functional Hierarchical Models for Identifying Genes with Different Time‐Course Expression Profiles

Describes a project that uses

Uses Software

• Matlab
• mclust
• R
• apcluster
• APCluster
• AS 136
• impute
• DAVID
• Mfuzz

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