Benjamin J. Raphael

MaRDI QIDQ1708423zbMATH OpenDBLPWikidataFDO

List of research outcomes

This list is not complete and representing at the moment only items from zbMATH Open and arXiv. We are working on additional sources - please check back here soon!

Publication	Date of Publication	Type
Learning latent trajectories in developmental time series with hidden-Markov optimal transport	2025-12-04	Paper
The tree labeling polytope: a unified approach to ancestral reconstruction problems	2025-12-04	Paper
Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics	2025-02-24	Paper
\texttt{DeST-OT}: alignment of spatiotemporal transcriptomics data	2025-02-24	Paper
Mapping the topography of spatial gene expression with interpretable deep learning	2025-02-24	Paper
Maximum likelihood inference of time-scaled cell lineage trees with mixed-type missing data	2025-02-24	Paper
A maximum parsimony principle for multichromosomal complex genome rearrangements	2024-08-13	Paper
Genome halving and aliquoting under the copy number distance	2023-07-24	Paper
NetMix: a network-structured mixture model for reduced-bias estimation of altered subnetworks Lecture Notes in Computer Science	2022-10-14	Paper
NetMix2: unifying network propagation and altered subnetworks	2022-08-30	Paper
Copy-number evolution problems: complexity and algorithms	2018-03-23	Paper
On the sample complexity of cancer pathways identification Lecture Notes in Computer Science	2016-06-22	Paper
Reconstructing mutational history in multiply sampled tumors using perfect phylogeny mixtures Lecture Notes in Computer Science	2015-07-22	Paper
Classical function theory, operator dilation theory, and machine computation on multiply-connected domains Memoirs of the American Mathematical Society	2008-02-20	Paper

Research outcomes over time

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