Reconstructing mutational history in multiply sampled tumors using perfect phylogeny mixtures

DOI10.1007/978-3-662-44753-6_27zbMATH Open1367.92082OpenAlexW2192492580MaRDI QIDQ5265099FDOQ5265099

Authors: Iman Hajirasouliha, Benjamin J. Raphael 

Publication date: 22 July 2015

Published in: Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-3-662-44753-6_27

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zbMATH Keywords

graph coloringDNA sequencingperfect phylogenycancer genomics

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Problems related to evolution (92D15) Computational difficulty of problems (lower bounds, completeness, difficulty of approximation, etc.) (68Q17) Coloring of graphs and hypergraphs (05C15) Computational methods for problems pertaining to biology (92-08)

Cited In (7)

• Character-based phylogeny construction and its application to tumor evolution
• Parameterized Complexity for Finding a Perfect Phylogeny from Mixed Tumor Samples
• Phyolin: identifying a linear perfect phylogeny in single-cell DNA sequencing data of tumors
• Finding a perfect phylogeny from mixed tumor samples
• Copy-number evolution problems: complexity and algorithms
• Joint inference of repeated evolutionary trajectories and patterns of clonal exclusivity or co-occurrence from tumor mutation trees
• Parsimonious Clone Tree Reconciliation in Cancer.

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