Parsimonious Clone Tree Reconciliation in Cancer.

DOI10.4230/LIPICS.WABI.2021.9MaRDI QIDQ6133871zbMATH OpenOpenAlexFDO

Authors Palash Sashittal, Simone Zaccaria, Mohammed El-Kebir

Publication date 24 July 2023

Full work available at URL https://doi.org/10.4230/lipics.wabi.2021.9

zbMATH Keywords

phylogeneticsmixed integer linear programmingintra-tumor heterogeneity

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Mixed integer programming (90C11) Computational methods for problems pertaining to biology (92-08) Pathology, pathophysiology (92C32)

Recommendations

• TreeClone: reconstruction of tumor subclone phylogeny based on mutation pairs using next generation sequencing data
• Phylogeny-based tumor subclone identification using a Bayesian feature allocation model
• A phylogenetic latent feature model for clonal deconvolution
• RNDClone: tumor subclone reconstruction based on integrating DNA and RNA sequence data
• Reconstructing mutational history in multiply sampled tumors using perfect phylogeny mixtures

Cited in

(7)

• TreeClone: reconstruction of tumor subclone phylogeny based on mutation pairs using next generation sequencing data
• Joint analysis of single-cell and bulk tissue sequencing data to infer intratumor heterogeneity
• RNDClone: tumor subclone reconstruction based on integrating DNA and RNA sequence data
• Reconstructing mutational history in multiply sampled tumors using perfect phylogeny mixtures
• Ancestral inference in tumors: how much can we know?
• Tumor copy number deconvolution integrating bulk and single-cell sequencing data
• Copy-number evolution problems: complexity and algorithms

This page was built for publication: Parsimonious Clone Tree Reconciliation in Cancer.

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q6133871)