Comparing segmentation methods for genome annotation based on RNA-seq data
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Recommendations
- Identifying atypically expressed chromosome regions using RNA-Seq data
- Deconvolution of base pair level RNA-seq read counts for quantification of transcript expression levels
- Bayesian analysis of RNA-Seq data using a family of negative binomial models
- Bayesian estimation of differential transcript usage from RNA-seq data
- Statistical modeling of RNA-Seq data
Cites work
- scientific article; zbMATH DE number 3860199 (Why is no real title available?)
- A Bayesian Analysis for Change Point Problems
- A Cluster Analysis Method for Grouping Means in the Analysis of Variance
- Denoising array-based comparative genomic hybridization data using wavelets
- Exact posterior distributions and model selection criteria for multiple change-point detection problems
- Fast estimation of posterior probabilities in change-point analysis through a constrained hidden Markov model
- Partition Regression
- Segmentation of the Poisson and negative binomial rate models: a penalized estimator
- Segmentation of the mean of heteroscedastic data via cross-validation
Cited in
(8)- Yanagi: transcript segment library construction for RNA-seq quantification
- ModHMM: a modular supra-Bayesian genome segmentation method
- Consistency of a range of penalised cost approaches for detecting multiple changepoints
- Identifying atypically expressed chromosome regions using RNA-Seq data
- RNA Pol II transcription model and interpretation of GRO-seq data
- A breakpoint detection in the mean model with heterogeneous variance on fixed time intervals
- Nonparametric multiple change-point estimation for analyzing large Hi-C data matrices
- New efficient algorithms for multiple change-point detection with reproducing kernels
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