Distance geometry in structural biology: new perspectives

DOI10.1007/978-1-4614-5128-0_16MaRDI QIDQ2841712zbMATH OpenOpenAlexFDO

Authors Thérèse E. Malliavin, Antonio Mucherino, Michael Nilges

Publication date 29 July 2013

Published in Distance Geometry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-1-4614-5128-0_16

zbMATH Keywords

distance geometry problemnuclear magnetic resonance

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)

Recommendations

• An overview on protein structure determination by NMR: historical and future perspectives of the use of distance geometry methods
• Recent advances on the discretizable molecular distance geometry problem
• Distance geometry methods for protein structure determination
• Solving a generalized distance geometry problem for protein structure determination
• Minimal NMR distance information for rigidity of protein graphs

Cited in

(19)

• A symmetry-based splitting strategy for discretizable distance geometry problems
• Recent advances on the interval distance geometry problem
• Recent results on assigned and unassigned distance geometry with applications to protein molecules and nanostructures
• Recent advances on the discretizable molecular distance geometry problem
• A multiplicative weights update algorithm for MINLP
• Geometry of data and biology
• Optimal partial discretization orders for discretizable distance geometry
• Distance geometry methods for protein structure determination
• Distance geometry for realistic molecular conformations
• An overview on protein structure determination by NMR: historical and future perspectives of the use of distance geometry methods
• Solving a generalized distance geometry problem for protein structure determination
• Protein structure estimation from incomplete NMR data
• Discretization orders and efficient computation of Cartesian coordinates for distance geometry
• Discretization orders for protein side chains
• Maxent-stress optimization of 3D biomolecular models
• New error measures and methods for realizing protein graphs from distance data
• On the computation of protein backbones by using artificial backbones of hydrogens
• scientific article; zbMATH DE number 2188749 (Why is no real title available?)
• Distance geometry problem and algorithm based on barycentric coordinates

Describes a project that uses

Uses Software

• CYANA
• ARIA
• MODELLER

This page was built for publication: Distance geometry in structural biology: new perspectives

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2841712)