FME

swMATH14241CRANFMEMaRDI QIDQ26146FDOQ26146

A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis

Thomas Petzoldt, Karline Soetaert

Last update: 5 July 2023

Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0

Software version identifier: 1.3.6.2, 1.0, 1.1.1, 1.1, 1.3.1, 1.3.2, 1.3.5, 1.3.6.1, 1.3, 1.3.6.3

Official website: https://cran.r-project.org/web/packages/FME/index.html

Source code repository: https://github.com/cran/FME

Description

Provides functions to help in fitting models to data, to perform Monte Carlo, sensitivity and identifiability analysis. It is intended to work with models be written as a set of differential equations that are solved either by an integration routine from package 'deSolve', or a steady-state solver from package 'rootSolve'. However, the methods can also be used with other types of functions.

Cited In (43)

• Multiple verification in complex biological systems: the bone remodelling case study
• Pairing food and drink: a physiological model of blood ethanol levels for a variety of drinking behaviors
• Solving ODEs, DAEs, DDEs and PDEs in R
• Mathematical modeling of tumor and cancer stem cells treated with CAR-T therapy and inhibition of TGF-\(\beta\)
• A modified Leslie-Gower predator-prey interaction model and parameter identifiability
• Automatically tuned general-purpose MCMC via new adaptive diagnostics
• Mathematical model of radiation effects on thrombopoiesis in rhesus macaques and humans
• Modeling and predicting the influence of PM\(_{2.5}\) on children's respiratory diseases
• A theoretical mathematical assessment of the effectiveness of coartemether in the treatment of \textit{Plasmodium falciparum} malaria infection
• Inference for differential equation models using relaxation via dynamical systems
• deSolve
• simecol
• BGX
• Chemotaxis
• BvpSolve
• RootSolve
• Grapham
• minpack.lm
• scaRabee
• BlenX
• ReacTran
• CollocInfer
• odesolve
• BGFit
• atmcmc
• GillespieSSA
• Bayesian calibration of the community land model using surrogates
• CLM
• GREENeR
• Laplace based approximate posterior inference for differential equation models
• biogrowth
• growthrates
• BCE
• Modeling nutrient and disease dynamics in a plant-pathogen system
• Bayesian mechanistic modeling of thermodynamically controlled volatile fatty acid, hydrogen and methane production in the bovine rumen
• ConsReg
• spsh
• DivE
• capm
• bioinactivation
• bioOED
• growthrates
• Dynamics of HIV-1 coinfection in different susceptible target cell populations during cell-free infection

This page was built for software: FME