Finding dominant structures of nonreversible Markov processes
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Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Numerical analysis or methods applied to Markov chains (65C40) Dynamic and nonequilibrium phase transitions (general) in statistical mechanics (82C26)
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Cites work
- A direct approach to conformational dynamics based on hybrid Monte Carlo
- An introduction to Markov state models and their application to long timescale molecular simulation
- Computing the Minimal Rebinding Effect Included in a Given Kinetics
- Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations
- Cycle Representations of Markov Processes
- Fuzzy spectral clustering by PCCA+: application to Markov state models and data classification
- scientific article; zbMATH DE number 2152902 (Why is no real title available?)
- Identification of almost invariant aggregates in reversible nearly uncoupled Markov chains
- Mathematical theory of nonequilibrium steady states. On the frontier of probability and dynamical systems.
- Matlab code for sorting real Schur forms
- Meshless methods in conformation dynamics
- Metastability and Dominant Eigenvalues of Transfer Operators
- Metastability and low lying spectra in reversible Markov chains
- Metastability and Markov state models in molecular dynamics. Modeling, analysis, algorithmic approaches
- Metastability in reversible diffusion processes. II: Precise asymptotics for small eigenvalues
- Modularity revisited: a novel dynamics-based concept for decomposing complex networks
- On the approximation quality of Markov state models
- Optimal partition and effective dynamics of complex networks
- Phase transitions and metastability in Markovian and molecular systems
- Robust Perron cluster analysis in conformation dynamics
- The Fokker-Planck equation. Methods of solutions and applications.
- Transition Path Theory for Markov Jump Processes
Cited in
(9)- Spectral clustering for non-reversible Markov chains
- Koopman-based spectral clustering of directed and time-evolving graphs
- Kernel embedding based variational approach for low-dimensional approximation of dynamical systems
- Variational approach for learning Markov processes from time series data
- Agent-based modeling: population limits and large timescales
- Mixed-integer programming for cycle detection in nonreversible Markov processes
- Overcoming the timescale barrier in molecular dynamics: Transfer operators, variational principles and machine learning
- A Markov constraint to uniquely identify elementary flux mode weights in unimolecular metabolic networks
- A robust spectral method for finding lumpings and meta stable states of non-reversible Markov chains
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