Improved biclustering of microarray data demonstrated through systematic performance tests

DOI10.1016/J.CSDA.2004.02.003MaRDI QIDQ125777zbMATH OpenOpenAlexWikidataFDO

Authors Heather Turner, Trevor Bailey, Wojtek Krzanowski, Heather L. Turner, T. C. Bailey, Wojtek J. Krzanowski

Publication date February 2005

Published in Computational Statistics and Data Analysis (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.csda.2004.02.003

zbMATH Keywords

artificial microarray databicluster quality measuresbiclusteringoverlapping clusteringperformance evaluationtwo-way clustering

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10)

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Cites work

• scientific article; zbMATH DE number 1750182 (Why is no real title available?)
• A simple method for generating additive clustering models with limited complexity
• Additive clustering and qualitative factor analysis methods for similarity matrices
• An alternating combinatorial optimization approach to fitting the INDCLUS and generalized INDCLUS models
• An extraction and regularization approach to additive clustering
• Decomposing gene expression into cellular processes
• GENNCLUS: New models for general nonhierarchical clustering analysis
• MAPCLUS: A mathematical programming approach to fitting the ADCLUS model
• Statistical inference for simultaneous clustering of gene expression data

Cited in

(28)

• A probabilistic relaxation labeling framework for reducing the noise effect in geometric biclustering of gene expression data
• A fuzzy biclustering algorithm for single cluster
• A Bayesian hierarchical hidden Markov model for clustering and gene selection: application to kidney cancer gene expression data
• Multi-objective evolutionary biclustering of gene expression data
• Additive biclustering: a comparison of one new and two existing ALS algorithms
• A new geometric biclustering algorithm based on the Hough transform for analysis of large-scale microarray data
• Complexity of modification problems for reciprocal best match graphs
• Local spatial biclustering and prediction of urban juvenile delinquency and recidivism
• The Gibbs-plaid biclustering model
• Finding large average submatrices in high dimensional data
• Stability-based validation of bicluster solutions
• Biclustering of ARMA time series
• Bsig: evaluating the statistical significance of biclustering solutions
• Generalized finite mixture of multivariate regressions with applications to therapeutic biomarker identification
• Convex biclustering
• biclust
• Topological biclustering ARTMAP for identifying within bicluster relationships
• Nonparametric Bayesian Two-Level Clustering for Subject-Level Single-Cell Expression Data
• Erratum
• Biclustering with heterogeneous variance
• On two‐way Bayesian agglomerative clustering of gene expression data
• Regularized matrix data clustering and its application to image analysis
• The penalized biclustering model and related algorithms
• Linear coherent bi-cluster discovery via beam detection and sample set clustering
• A unifying model for biclustering
• Biclustering via semiparametric Bayesian inference
• scientific article; zbMATH DE number 7306902 (Why is no real title available?)
• Improved biclustering on expression data through overlapping control

Describes a project that uses

Uses Software

• R
• limma

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