Inferring Phenotypic Trait Evolution on Large Trees With Many Incomplete Measurements

DOI10.1080/01621459.2020.1799812MaRDI QIDQ5885096zbMATH OpenOpenAlexWikidataFDO

Authors Lam Si Tung Ho, Philippe Lemey, Marc A. Suchard

Publication date 27 March 2023

Published in Journal of the American Statistical Association (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/1906.03222

zbMATH Keywords

Bayesian inferencematrix-normalmissing dataphylogenetics

Mathematics Subject Classification ID

Missing data (62D10) Bayesian inference (62F15) Applications of statistics to biology and medical sciences; meta analysis (62P10)

Recommendations

• Efficient Bayesian inference of general Gaussian models on large phylogenetic trees
• Large-scale inference of correlation among mixed-type biological traits with phylogenetic multivariate probit models
• Assessing phenotypic correlation through the multivariate phylogenetic latent liability model
• Fast likelihood calculation for multivariate Gaussian phylogenetic models with shifts
• Putting phylogeny into the analysis of biological traits: a methodological approach

Cites work

• An expectation-maximization algorithm for the matrix normal distribution with an application in remote sensing
• Assessing phenotypic correlation through the multivariate phylogenetic latent liability model
• Conjugate analysis of multivariate normal data with incomplete observations
• Fast likelihood calculation for multivariate Gaussian phylogenetic models with shifts
• scientific article; zbMATH DE number 3943611 (Why is no real title available?)
• scientific article; zbMATH DE number 4088699 (Why is no real title available?)
• scientific article; zbMATH DE number 3567782 (Why is no real title available?)
• scientific article; zbMATH DE number 720679 (Why is no real title available?)
• Moments and Distributions of Estimates of Population Parameters from Fragmentary Samples
• The conditioned reconstructed process
• Transposable regularized covariance models with an application to missing data imputation

Cited in

(5)

• Variant evolutionary trees under phenotypic variance
• Large-scale inference of correlation among mixed-type biological traits with phylogenetic multivariate probit models
• Efficient Bayesian inference of general Gaussian models on large phylogenetic trees
• Fractional Brownian motion for modeling phylogenetic trait evolution: a computational framework for long-term dependencies
• Assessing phenotypic correlation through the multivariate phylogenetic latent liability model

Describes a project that uses

Uses Software

• phytools
• ARB

This page was built for publication: Inferring Phenotypic Trait Evolution on Large Trees With Many Incomplete Measurements

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q5885096)