Learning effective amino-acid interactions

DOI10.1007/978-3-540-44827-3_10MaRDI QIDQ3158122zbMATH OpenFDO

Authors Flavio Seno, Cristian Micheletti, Amos Maritan, Jayanth R. Banavar

Publication date 20 January 2005

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-540-44827-3_10

zbMATH Keywords

perceptron learning

Mathematics Subject Classification ID

Biophysics (92C05) Biochemistry, molecular biology (92C40)

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(6)

• New techniques for the construction of residue potentials for protein folding
• Self-consistent knowledge-based approach to protein design
• NONSYMMETRIC TWO-BODY SCORE FUNCTION FOR PROTEIN FOLD RECOGNITION: NEXT NEAREST NEIGHBOR-ADJACENCY OF TWO AMINO ACIDS
• Global analysis of protein folding using massively parallel design, synthesis, and testing
• Using an abstraction of amino acid types to improve the quality of statistical potentials for protein structure prediction
• Fold recognition using the OPLS all-atom potential and the surface generalized Born solvent model

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