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Cited in
(50)- Modeling of the U1 snRNP assembly pathway in alternative splicing in human cells using Petri nets
- A new constraint-based description of the steady-state flux cone of metabolic networks
- yFiles
- Restricted cooperative games on metabolic networks reveal functionally important reactions
- Stoichiometric analysis of self-maintaining metabolisms
- Structural robustness of metabolic networks with respect to multiple knockouts
- An old paper revisited: ``A mathematical model of carbohydrate energy metabolism. interaction between glycolysis, the krebs cycle and the H-transporting shuttles at varying atpases load by V. V. Dynnik et al.
- PoCaB
- Celldesigner
- An interval approach for dealing with flux distributions and elementary modes activity patterns
- Modular decomposition of metabolic systems via null-space analysis
- Finding MEMo: minimum sets of elementary flux modes
- Generic flux coupling analysis
- Energetically plausible model of a self-maintaining protocellular system
- EFMEvolver
- Robustness analysis of elementary flux modes generated by column generation
- BioModels
- KEGGtranslator
- JSBML
- Ernest
- CLPGUI
- Petriweb
- On enumerating minimal siphons in Petri nets using CLP and SAT solvers: theoretical and practical complexity
- BiGG
- PoCaB: A Software Infrastructure to Explore Algebraic Methods for Bio-chemical Reaction Networks
- tFCA
- FFCA
- F2c2
- The minimal hitting set generation problem: algorithms and computation
- AlgoRun
- SuBliMinaL
- INA
- MTT
- COBRA Toolbox
- Energy-based analysis of biomolecular pathways
- anNET
- Flux modules in metabolic networks
- On dynamically generating relevant elementary flux modes in a metabolic network using optimization
- expa
- YANA
- FluxAnalyzer
- polco
- efmtool
- MEMo
- GNA
- Stoichiometric and constraint-based analysis of biochemical reaction networks
- ScrumPy
- Parallelization of nullspace algorithm for the computation of metabolic pathways
- A statistical thermodynamical interpretation of metabolism
- On flux coupling analysis of metabolic subsystems
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