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swMATH13278MaRDI QIDQ25193FDOQ25193
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Official website: http://pinguin.biologie.uni-jena.de/bioinformatik/networks/index.html
Cited In (49)
- Robustness analysis of elementary flux modes generated by column generation
- Modular decomposition of metabolic systems via null-space analysis
- Finding MEMo: minimum sets of elementary flux modes
- On enumerating minimal siphons in Petri nets using CLP and SAT solvers: theoretical and practical complexity
- PoCaB: A Software Infrastructure to Explore Algebraic Methods for Bio-chemical Reaction Networks
- A statistical thermodynamical interpretation of metabolism
- Generic flux coupling analysis
- Stoichiometric analysis of self-maintaining metabolisms
- A new constraint-based description of the steady-state flux cone of metabolic networks
- Energy-based analysis of biomolecular pathways
- Energetically plausible model of a self-maintaining protocellular system
- PoCaB
- Flux modules in metabolic networks
- Celldesigner
- EFMEvolver
- BioModels
- Ernest
- JSBML
- KEGGtranslator
- CLPGUI
- Petriweb
- BiGG
- F2c2
- FFCA
- tFCA
- Restricted cooperative games on metabolic networks reveal functionally important reactions
- An old paper revisited: ``A mathematical model of carbohydrate energy metabolism. interaction between glycolysis, the krebs cycle and the H-transporting shuttles at varying atpases load by V. V. Dynnik et al.
- Structural robustness of metabolic networks with respect to multiple knockouts
- AlgoRun
- MTT
- SuBliMinaL
- INA
- COBRA Toolbox
- anNET
- Modeling of the U1 snRNP assembly pathway in alternative splicing in human cells using Petri nets
- expa
- YANA
- FluxAnalyzer
- efmtool
- MEMo
- polco
- GNA
- On flux coupling analysis of metabolic subsystems
- ScrumPy
- An interval approach for dealing with flux distributions and elementary modes activity patterns
- The minimal hitting set generation problem: algorithms and computation
- Parallelization of nullspace algorithm for the computation of metabolic pathways
- On dynamically generating relevant elementary flux modes in a metabolic network using optimization
- Stoichiometric and constraint-based analysis of biochemical reaction networks
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