Multifractal characterization of complete genomes

DOI10.1088/0305-4470/34/36/301MaRDI QIDQ2766227zbMATH OpenOpenAlexFDO

Authors Vo V. Anh, Ka-Sing Lau, Zu-Guo Yu

Publication date 27 January 2002

Published in Journal of Physics A: Mathematical and General (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/physics/0108054

zbMATH Keywords

characterization of DNA sequencesexponential functioninfinitely divisible distributionmeasure representationrandom cascades

Mathematics Subject Classification ID

Infinitely divisible distributions; stable distributions (60E07) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Abstract: This paper develops a theory for characterisation of DNA sequences based on their measure representation. The measures are shown to be random cascades generated by an infinitely divisible distribution. This probability distribution is uniquely determined by the exponent function in the multifractal theory of random cascades. Curve fitting to a large number of complete genomes of bacteria indicates that the Gamma density function provides an excellent fit to the exponent function, and hence to the probability distribution of the complete genomes.

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• Fractals related to long DNA sequences and complete genomes
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• scientific article; zbMATH DE number 559069 (Why is no real title available?)
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• Analytical and numerical solutions of a one-dimensional fractional-in-space diffusion equation in a composite medium

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