Network-based auto-probit modeling for protein function prediction

DOI10.1111/J.1541-0420.2010.01519.XMaRDI QIDQ3100798zbMATH OpenOpenAlexWikidataFDO

Authors Xiao-Yu Jiang, David Gold, Eric D. Kolaczyk

Publication date 21 November 2011

Published in Biometrics (Search for Journal in Brave)

Full work available at URL http://europepmc.org/articles/pmc3116961

zbMATH Keywords

Bayesian hierarchical modelgene ontology annotation uncertaintyMCMC algorithmSTRING

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Time series, auto-correlation, regression, etc. in statistics (GARCH) (62M10) Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40) Systems biology, networks (92C42)

Recommendations

• On network-based kernel methods for protein-protein interactions with applications in protein functions prediction
• Semantic and layered protein function prediction from PPI networks
• Inference of protein function from the structure of interaction networks
• Research in Computational Molecular Biology
• Predicting protein functions from PPI networks using functional aggregation

Cites work

• Binary Probability Maps Using a Hidden Conditional Autoregressive Gaussian Process with an Application to Finnish Common Toad Data
• The elements of statistical learning. Data mining, inference, and prediction
• The use of unlabeled data in predictive modeling

Cited in

(6)

• Predicting associations between proteins and multiple diseases
• A hierarchical Bayesian model for predicting ecological interactions using scaled evolutionary relationships
• A new protein graph model for function prediction
• Longitudinal conditional models with intermittent missingness: SAS code and applications
• Estimation of Subgraph Densities in Noisy Networks
• Covariate-Informed Latent Interaction Models: Addressing Geographic & Taxonomic Bias in Predicting Bird–Plant Interactions

Describes a project that uses

Uses Software

• ElemStatLearn

This page was built for publication: Network-based auto-probit modeling for protein function prediction

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q3100798)