Inference of protein function from the structure of interaction networks

DOI10.1007/978-0-8176-4789-6_18MaRDI QIDQ3064411zbMATH OpenOpenAlexFDO

Authors Oliver Mason, Mark Verwoerd, Peter Clifford

Publication date 21 December 2010

Published in Structural Analysis of Complex Networks (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-0-8176-4789-6_18

zbMATH Keywords

graph algorithmsgraph multicutsMarkov random fieldsprotein function prediction

Mathematics Subject Classification ID

Graph algorithms (graph-theoretic aspects) (05C85) Applications of graph theory (05C90) Random fields (60G60) Biochemistry, molecular biology (92C40) Systems biology, networks (92C42)

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(22)

• FunCat functional inference with belief propagation and feature integration
• Predicting protein-protein interactions using graph invariants and a neural network
• A network hierarchy-based method for functional module detection in protein-protein interaction networks
• Semantic and layered protein function prediction from PPI networks
• ProTranslator: zero-shot protein function prediction using textual description
• The molecular mechanisms associated with PIN7, a protein-protein interaction network of seven pleiotropic proteins
• A survey of computational methods in protein-protein interaction networks
• On network-based kernel methods for protein-protein interactions with applications in protein functions prediction
• Analysis and identification of toxin targets by topological properties in protein-protein interaction network
• Protein function prediction in proteomics era
• Evolutionary analysis of protein interaction networks
• Network-based auto-probit modeling for protein function prediction
• Predicting disease-related genes by path structure and community structure in protein-protein networks
• Estimating the parameters of a model for protein–protein interaction graphs
• Protein Function Annotation Based on Ortholog Clusters Extracted from Incomplete Genomes Using Combinatorial Optimization
• Progressive clustering based method for protein function prediction
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• Predicting protein functions from PPI networks using functional aggregation
• Inference of Protein-Protein Interactions by Using Co-evolutionary Information
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