New representation and algorithm for drawing RNA structure with pseudoknots

DOI10.1007/3-540-46145-0_19MaRDI QIDQ4410543zbMATH OpenFDO

Authors Yujin Lee, Wootaek Kim, Kyungsook Han

Publication date 3 July 2003

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL http://link.springer.de/link/service/series/0558/bibs/2454/24540191.htm

Mathematics Subject Classification ID

Information storage and retrieval of data (68P20) Computer graphics; computational geometry (digital and algorithmic aspects) (68U05) Computing methodologies and applications (68U99) Biochemistry, molecular biology (92C40) Biomedical imaging and signal processing (92C55)

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(7)

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• Visualization of RNA pseudoknot structures
• Visualization of RNA secondary structure with pseudoknots
• Efficient drawing of RNA secondary structure
• Visualization of barrier tree sequences revisited
• RNA secondary structures: an approach through pseudoknots and fatgraphs
• RNA secondary structure determination and representation based on constraints satisfaction

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