Visualization of RNA pseudoknot structures

DOI10.1007/3-540-36569-9_12MaRDI QIDQ4414764zbMATH OpenFDO

Authors Wootaek Kim, Yujin Lee, Kyungsook Han

Publication date 27 July 2003

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL http://link.springer.de/link/service/series/0558/bibs/2565/25650181.htm

Mathematics Subject Classification ID

Graph theory (including graph drawing) in computer science (68R10) Computer graphics; computational geometry (digital and algorithmic aspects) (68U05) Protein sequences, DNA sequences (92D20)

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• New representation and algorithm for drawing RNA structure with pseudoknots
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Cited in

(8)

• Combinatorial design of pseudoknot RNA
• Graph-theoretic partitioning of RNAs and classification of pseudoknots
• Pseudoknot-generating operation
• New representation and algorithm for drawing RNA structure with pseudoknots
• Visualization of RNA secondary structure with pseudoknots
• Efficient drawing of RNA secondary structure
• RNA secondary structures: an approach through pseudoknots and fatgraphs
• Classifying RNA pseudoknotted structures

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