nimble
A system for writing hierarchical statistical models largely compatible with 'BUGS' and 'JAGS', writing nimbleFunctions to operate models and do basic R-style math, and compiling both models and nimbleFunctions via custom-generated C++. 'NIMBLE' includes default methods for MCMC, Laplace Approximation, Monte Carlo Expectation Maximization, and some other tools. The nimbleFunction system makes it easy to do things like implement new MCMC samplers from R, customize the assignment of samplers to different parts of a model from R, and compile the new samplers automatically via C++ alongside the samplers 'NIMBLE' provides. 'NIMBLE' extends the 'BUGS'/'JAGS' language by making it extensible: New distributions and functions can be added, including as calls to external compiled code. Although most people think of MCMC as the main goal of the 'BUGS'/'JAGS' language for writing models, one can use 'NIMBLE' for writing arbitrary other kinds of model-generic algorithms as well. A full User Manual is available at <https://r-nimble.org>.
- Bayesian semiparametric latent variable model with DP prior for joint analysis: Implementation with nimble
- Bayesian model assessment for jointly modeling multidimensional response data with application to computerized testing
- Bayesian Estimation for Bivariate Gamma Processes with Copula
- NumPyro
- Bridging randomized controlled trials and single-arm trials using commensurate priors in arm-based network meta-analysis
- Using R for Bayesian spatial and spatio-temporal health modeling
- Automated parameter blocking for efficient Markov chain Monte Carlo sampling
- MSPOCK: alleviating spatial confounding in multivariate disease mapping models
- Copula particle filters
- Spatially dependent multiple testing under model misspecification, with application to detection of anthropogenic influence on extreme climate events
- Bayesian analyses of an exponential-Poisson and related zero augmented type models
- An advanced hidden Markov model for hourly rainfall time series
- Rank-normalization, folding, and localization: an improved \(\widehat{R}\) for assessing convergence of MCMC (with Discussion)
- Spatio-temporal change of support modeling with \texttt{R}
- A flexible class of parametric distributions for Bayesian linear mixed models
- Mixtures of multivariate restricted skew-normal factor analyzer models in a Bayesian framework
- Continuous-time discrete-state modeling for deep whale dives
- Bayesian joint analysis using a semiparametric latent variable model with non-ignorable missing covariates for CHNS data
- Improving teeth aesthetics using a spatially shared-parameters model for independent regular lattices
- Computational Bayesian statistics. An introduction
- Bayesian adjustment for preferential testing in estimating infection fatality rates, as motivated by the COVID-19 pandemic
- A multivariate spatiotemporal change-point model of opioid overdose deaths in Ohio
- Predicting Home Run Production in Major League Baseball Using a Bayesian Semiparametric Model
- Time series analysis for the state-space model with R/Stan
- Stochastic gradient Markov chain Monte Carlo
- CODA
- dlm
- INLA
- BUGS
- JAGS
- R-INLA
- rjags
- mcmcse
- AD Model Builder
- OpenBUGS
- mvabund
- spBayes
- Stan
- pomp
- covreg
- LaplacesDemon
- RStan
- marked
- Program MARK
- PRESENCE
- RMark
- KFAS
- unmarked
- SimInf
- CARBayes
- convoSPAT
- RSpectra
- mvQuad
- rstan
- mra
- TeachingDemos
- TMB
- shinystan
- versions
- ngspatial
- arm
- secr
- scoringRules
- BayesianTools
- Biips
- LibBi
- AHMbook
- vSMC
- bridgesampling
- mcmcplots
- CitNetExplorer
- MARK
- Gibbsit
- dobson
- t.f
- overlapping
- BayesNSGP
- factorstochvol
- epimdr
- MultiBUGS
- tidybayes
- meanShiftR
- bayest
- ADVI
- glmm
- areal
- pycno
- CAM3
- spOccupancy
- ubms
- nimbleNoBounds
- nimbleSCR
- InvStablePrior
- nimbleCarbon
- saeHB
- nimbleAPT
- nimbleEcology
- tidycensus
- bcgam
- stableGR
This page was built for software: nimble
