TMB

MaRDI QIDQ28149swMATHCRANFDO

Authors Kasper Kristensen

Last update 12 December 2023

Copyright license GNU General Public License, version 2.0

Software version identifier 1.9.3, 1.9.4, 1.6.1, 1.6.2, 1.6.5, 1.6.6, 1.7.0, 1.7.2, 1.7.4, 1.7.5, 1.7.6, 1.7.7, 1.7.8, 1.7.9, 1.7.10, 1.7.11, 1.7.12, 1.7.13, 1.7.14, 1.7.15, 1.7.16, 1.7.17, 1.7.18, 1.7.19, 1.7.20, 1.7.21, 1.7.22, 1.8.0, 1.8.1, 1.9.0, 1.9.1, 1.9.2, 1.9.5, 1.9.6, 1.9.7, 1.9.8, 1.9.9, 1.9.10

Official website https://cran.r-project.org/web/packages/TMB/index.html

Source code repository https://github.com/cran/TMB

Description

With this tool, a user should be able to quickly implement complex random effect models through simple C++ templates. The package combines 'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain an efficient implementation of the applied Laplace approximation with exact derivatives. Key features are: Automatic sparseness detection, parallelism through 'BLAS' and parallel user templates.

Cited in

(only showing first 100 items - show all)

• DLMtool
• SpatialGEV
• MLZ
• BAT
• SPAS
• ef
• glmmrBase
• JABBA
• tramME
• elevatr
• smcDE
• optimr
• stochvolTMB
• dalmatian
• A scalable and efficient covariate selection criterion for mixed effects regression models with unknown random effects structure
• Generalized linear latent variable models for multivariate count and biomass data in ecology
• CppAD
• Modified Cholesky Riemann manifold Hamiltonian Monte Carlo: exploiting sparsity for fast sampling of high-dimensional targets
• Bootstrap estimation of uncertainty in prediction for generalized linear mixed models
• ADMB
• gcmr
• StOCNET
• R-INLA
• The conditionally autoregressive hidden Markov model (CarHMM): inferring behavioural states from animal tracking data exhibiting conditional autocorrelation
• Flexible bivariate Poisson integer-valued GARCH model
• AD Model Builder
• Adaptive log-linear zero-inflated generalized Poisson autoregressive model with applications to crime counts
• mvabund
• Varying-coefficient stochastic differential equations with applications in ecology
• A spatiotemporal investigation of the cod stock in the northern Gulf of St. Lawrence
• Frequentist conditional variance for nonlinear mixed-effects models
• Laplace approximations for capture-recapture models in the presence of individual heterogeneity
• The sibling distribution for multivariate life time data
• Greater than the sum of its parts: computationally flexible Bayesian hierarchical modeling
• Multivariate transformed Gaussian processes
• Inference and computation with generalized additive models and their extensions
• Frequentist delta-variance approximations with mixed-effects models and TMB
• emdbook
• Modelling Ocean temperatures from bio-probes under preferential sampling
• nleqslv
• Stem
• minqa
• GeNIe
• MSBNx
• cts
• CollocInfer
• Program MARK
• RMark
• marked
• unmarked
• MethComp
• FKF
• glmmLasso
• Modelling informative time points: an evolutionary process approach
• Fast and universal estimation of latent variable models using extended variational approximations
• QFASA
• roxygen2
• meta4diag
• mvQuad
• boral
• moveHMM
• shinystan
• secr
• etasFLP
• swim
• iLaplace
• FRK
• nimble
• LibBi
• MSwM
• LMS
• NHMM
• Ceres Solver
• dhglm
• GADM
• momentuHMM
• crawl
• lgcp
• Dynamically Rescaled Hamiltonian Monte Carlo for Bayesian Hierarchical Models
• HMSC
• trustOptim
• mcglm
• PrevMap
• mlt
• effects
• blme
• geostatsp
• fastGHQuad
• SAS/ETS
• doRNG
• hnp
• mumm
• hawkes
• weathercan
• glmnetUtils
• MULTIFAN-CL
• disaggregation
• glmmTMB
• evgam
• tram

This page was built for software: TMB