TMB

MaRDI QIDQ28149swMATHCRANFDO

Authors Kasper Kristensen

Last update 12 December 2023

Copyright license GNU General Public License, version 2.0

Software version identifier 1.9.3, 1.9.4, 1.6.1, 1.6.2, 1.6.5, 1.6.6, 1.7.0, 1.7.2, 1.7.4, 1.7.5, 1.7.6, 1.7.7, 1.7.8, 1.7.9, 1.7.10, 1.7.11, 1.7.12, 1.7.13, 1.7.14, 1.7.15, 1.7.16, 1.7.17, 1.7.18, 1.7.19, 1.7.20, 1.7.21, 1.7.22, 1.8.0, 1.8.1, 1.9.0, 1.9.1, 1.9.2, 1.9.5, 1.9.6, 1.9.7, 1.9.8, 1.9.9, 1.9.10

Official website https://cran.r-project.org/web/packages/TMB/index.html

Source code repository https://github.com/cran/TMB

Description

With this tool, a user should be able to quickly implement complex random effect models through simple C++ templates. The package combines 'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain an efficient implementation of the applied Laplace approximation with exact derivatives. Key features are: Automatic sparseness detection, parallelism through 'BLAS' and parallel user templates.

Cited in

(only showing first 100 items - show all)

• Zero-inflated models for adjusting varying exposures: a cautionary note on the pitfalls of using offset
• Frequentist delta-variance approximations with mixed-effects models and TMB
• Identifiable state-space models: a case study of the Bay of Fundy sea scallop fishery
• Modelling Ocean temperatures from bio-probes under preferential sampling
• Dynamically Rescaled Hamiltonian Monte Carlo for Bayesian Hierarchical Models
• A comparison study on modeling of clustered and overdispersed count data for multiple comparisons
• Frequentist conditional variance for nonlinear mixed-effects models
• Flexible bivariate Poisson integer-valued GARCH model
• The sibling distribution for multivariate life time data
• Thin plate spline model under skew-normal random errors: estimation and diagnostic analysis for spatial data
• BAT
• fastGHQuad
• CppAD
• ADMB
• gcmr
• StOCNET
• minqa
• R-INLA
• AD Model Builder
• mvabund
• emdbook
• nleqslv
• Stem
• cts
• GeNIe
• MSBNx
• CollocInfer
• marked
• Program MARK
• RMark
• FKF
• MethComp
• glmmLasso
• unmarked
• QFASA
• roxygen2
• meta4diag
• boral
• mvQuad
• moveHMM
• shinystan
• effects
• secr
• doRNG
• evgam
• marqLevAlg
• etasFLP
• iLaplace
• FRK
• swim
• nimble
• LibBi
• MSwM
• LMS
• Ceres Solver
• NHMM
• dhglm
• GADM
• crawl
• momentuHMM
• lgcp
• HMSC
• mcglm
• PrevMap
• blme
• trustOptim
• mlt
• geostatsp
• SAS/ETS
• hnp
• hawkes
• mumm
• glmnetUtils
• weathercan
• MULTIFAN-CL
• disaggregation
• glmmTMB
• glmmixedlasso
• tram
• GLMMadaptive
• R2OpenBUGS
• MQMF
• hmmlearn
• swdpwr
• swCRTdesign
• SWSamp
• aghq
• coronavirus
• PHSMM
• inlabru
• CASAL
• spOccupancy
• tmbstan
• fishmethods
• GeoAdjust
• SAMtool
• stelfi
• sdmTMB
• hmmTMB
• gllvm

This page was built for software: TMB