TMB
From MaRDI portal
With this tool, a user should be able to quickly implement complex random effect models through simple C++ templates. The package combines 'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain an efficient implementation of the applied Laplace approximation with exact derivatives. Key features are: Automatic sparseness detection, parallelism through 'BLAS' and parallel user templates.
Cited in
(only showing first 100 items - show all)- mmrm
- gadget3
- DLMtool
- MLZ
- SpatialGEV
- elevatr
- SPAS
- ef
- glmmrBase
- tramME
- Bootstrap estimation of uncertainty in prediction for generalized linear mixed models
- optimr
- stochvolTMB
- bayesCPM
- A scalable and efficient covariate selection criterion for mixed effects regression models with unknown random effects structure
- Adaptive log-linear zero-inflated generalized Poisson autoregressive model with applications to crime counts
- Greater than the sum of its parts: computationally flexible Bayesian hierarchical modeling
- Laplace approximations for capture-recapture models in the presence of individual heterogeneity
- Using R for Modelling and Quantitative Methods in Fisheries
- Modelling informative time points: an evolutionary process approach
- dyads
- glmmADMB
- dsem
- phylosem
- RTMB
- Fast and universal estimation of latent variable models using extended variational approximations
- Newton step methods for AD of an objective defined using implicit functions
- Understanding the stochastic partial differential equation approach to smoothing
- JABBA
- smcDE
- dalmatian
- The conditionally autoregressive hidden Markov model (CarHMM): inferring behavioural states from animal tracking data exhibiting conditional autocorrelation
- Generalized linear latent variable models for multivariate count and biomass data in ecology
- Inference and computation with generalized additive models and their extensions
- Modified Cholesky Riemann manifold Hamiltonian Monte Carlo: exploiting sparsity for fast sampling of high-dimensional targets
- Multivariate transformed Gaussian processes
- Varying-coefficient stochastic differential equations with applications in ecology
- A spatiotemporal investigation of the cod stock in the northern Gulf of St. Lawrence
- spict
- Zero-inflated models for adjusting varying exposures: a cautionary note on the pitfalls of using offset
- Frequentist delta-variance approximations with mixed-effects models and TMB
- Identifiable state-space models: a case study of the Bay of Fundy sea scallop fishery
- Modelling Ocean temperatures from bio-probes under preferential sampling
- Dynamically Rescaled Hamiltonian Monte Carlo for Bayesian Hierarchical Models
- A comparison study on modeling of clustered and overdispersed count data for multiple comparisons
- Frequentist conditional variance for nonlinear mixed-effects models
- Flexible bivariate Poisson integer-valued GARCH model
- The sibling distribution for multivariate life time data
- Thin plate spline model under skew-normal random errors: estimation and diagnostic analysis for spatial data
- BAT
- fastGHQuad
- CppAD
- ADMB
- gcmr
- StOCNET
- minqa
- R-INLA
- AD Model Builder
- mvabund
- emdbook
- nleqslv
- Stem
- cts
- GeNIe
- MSBNx
- CollocInfer
- marked
- Program MARK
- RMark
- FKF
- MethComp
- glmmLasso
- unmarked
- QFASA
- roxygen2
- meta4diag
- boral
- mvQuad
- moveHMM
- shinystan
- effects
- secr
- doRNG
- evgam
- marqLevAlg
- etasFLP
- iLaplace
- FRK
- swim
- nimble
- LibBi
- MSwM
- LMS
- Ceres Solver
- NHMM
- dhglm
- GADM
- crawl
- momentuHMM
- lgcp
This page was built for software: TMB
